mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 66 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 736,686 | 0 | G | T | 54.4% | 22.3 / inf | 496 | intergenic (+2/‑139) | ybfQ/ybfL | pseudogene, H repeat‑associated protein/pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
| * | NC_000913 | 3,078,981 | 0 | G | T | 52.9% | 33.3 / inf | 463 | A117E (GCG→GAG) | cmtB | putative mannitol‑specific enzyme IIA component of PTS |
| * | NC_000913 | 4,105,432 | 0 | C | A | 52.4% | 41.3 / inf | 493 | R80L (CGC→CTC) | cpxR | response regulator in two‑component regulatory system with CpxA |
| * | NC_000913 | 4,186,425 | 0 | C | T | 51.6% | 56.6 / inf | 505 | P359L (CCA→CTA) | rpoC | RNA polymerase, beta prime subunit |
| * | NC_000913 | 1,422,898 | 0 | C | A | 51.3% | 46.9 / inf | 417 | pseudogene (198/500 nt) | ydaW | Rac prophage; pseudogene, DNA‑binding protein family;Phage or Prophage Related |
| * | NC_000913 | 1,910,654 | 0 | G | T | 50.5% | 64.7 / inf | 371 | A127S (GCA→TCA) | yebQ | putative transporter |
| * | NC_000913 | 3,642,902 | 0 | C | A | 50.4% | 120.7 / inf | 367 | A77A (GCG→GCT) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| * | NC_000913 | 2,213,458 | 0 | C | A | 50.1% | 87.1 / inf | 355 | R396L (CGC→CTC) | yehU | inner membrane putative sensory kinase in two‑component system with YehT |
| * | NC_000913 | 743,512 | 0 | G | T | 50.0% | 96.9 / inf | 423 | W229L (TGG→TTG) | ybgI | NIF3 family metal‑binding protein |
| * | NC_000913 | 2,396,740 | 0 | C | A | 49.9% | 100.8 / inf | 432 | G235C (GGT→TGT) | nuoH | NADH:ubiquinone oxidoreductase, membrane subunit H |
| * | NC_000913 | 1,940,462 | 0 | G | T | 49.9% | 113.7 / inf | 377 | P392T (CCG→ACG) | mepM | murein DD‑endopeptidase, space‑maker hydrolase, septation protein |
| * | NC_000913 | 2,456,163 | 0 | C | A | 49.7% | 142.1 / inf | 512 | intergenic (‑517/+164) | yfcV/sixA | putative fimbrial‑like adhesin protein/phosphohistidine phosphatase |
| * | NC_000913 | 2,640,117 | 0 | G | T | 49.6% | 126.9 / inf | 399 | R153R (CGC→CGA) | hisS | histidyl tRNA synthetase |
| * | NC_000913 | 1,189,808 | 0 | G | T | 49.6% | 114.9 / inf | 365 | R214S (CGC→AGC) | phoP | response regulator in two‑component regulatory system with PhoQ |
| * | NC_000913 | 2,312,578 | 0 | G | T | 49.4% | 98.0 / inf | 439 | R58S (CGT→AGT) | ompC | outer membrane porin protein C |
| * | NC_000913 | 2,037,101 | 0 | C | A | 49.2% | 156.9 / inf | 471 | R351L (CGA→CTA) | yedV | putative sensory kinase in two‑component regulatory system with YedW |
| * | NC_000913 | 1,961,240 | 0 | G | T | 48.7% | 137.7 / inf | 353 | L393L (CTG→CTT) | argS | arginyl‑tRNA synthetase |
| * | NC_000913 | 2,063,069 | 0 | C | A | 48.1% | 142.3 / inf | 423 | P85P (CCG→CCT) | ldtA | L,D‑transpeptidase linking Lpp to murein |
| * | NC_000913 | 4,456,993 | 0 | C | A | 47.0% | 244.8 / inf | 483 | C403* (TGC→TGA) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| * | NC_000913 | 3,653,367 | 0 | C | A | 46.7% | 241.6 / inf | 549 | pseudogene (137/483 nt) | yhiS | pseudogene |
| Marginal new junction evidence (lowest skew 10 of 68 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 260 (0.580) | 155/300 | 3.0 | 49.9% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2413609 | 261 (0.580) | coding (140/1203 nt) | ackA | acetate kinase A and propionate kinase 2 | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 221 (0.490) | 153/300 | 3.2 | 51.3% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1307993 = | 210 (0.470) | coding (653/1461 nt) | clsA | cardiolipin synthase 1 | |||||
| * | ? | NC_000913 | = 3395691 | 255 (0.570) | 222 (0.500) | 149/298 | 3.5 | 46.2% | coding (568/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein |
| ? | NC_000913 | 3395697 = | 263 (0.590) | coding (562/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein | |||||
| * | ? | NC_000913 | = 689045 | NA (NA) | 203 (0.450) | 148/300 | 3.7 | 45.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 889534 = | 246 (0.550) | coding (286/1686 nt) | ybjL | putative transporter | |||||
| * | ? | NC_000913 | = 1050545 | NA (NA) | 243 (0.540) | 142/300 | 4.3 | 48.2% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2413609 | 261 (0.580) | coding (140/1203 nt) | ackA | acetate kinase A and propionate kinase 2 | |||||
| * | ? | NC_000913 | = 1308001 | 218 (0.490) | 207 (0.460) | 138/300 | 4.8 | 48.7% | coding (645/1461 nt) | clsA | cardiolipin synthase 1 |
| ? | NC_000913 | 1978503 = | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 2413601 = | 299 (0.670) | 248 (0.550) | 137/300 | 4.9 | 45.3% | coding (132/1203 nt) | ackA | acetate kinase A and propionate kinase 2 |
| ? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 687851 = | NA (NA) | 230 (0.510) | 137/300 | 4.9 | 49.5% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 889537 | 235 (0.530) | coding (283/1686 nt) | ybjL | putative transporter | |||||
| * | ? | NC_000913 | = 1050545 | NA (NA) | 185 (0.410) | 125/300 | 6.4 | 45.9% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1308001 | 218 (0.490) | coding (645/1461 nt) | clsA | cardiolipin synthase 1 | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 215 (0.480) | 122/300 | 6.9 | 50.6% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1307993 = | 210 (0.470) | coding (653/1461 nt) | clsA | cardiolipin synthase 1 | |||||