mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 30 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,302,928 | 0 | T | G | 58.8% | ‑6.0 / 19.0 | 17 | V147G (GTG→GGG) | yhbV | putative peptidase YhbV |
| * | NC_000913 | 1,875,838 | 0 | A | C | 53.8% | ‑2.5 / 16.3 | 13 | T56P (ACC→CCC) | nimT | 2‑nitroimidazole exporter |
| * | NC_000913 | 4,021,824 | 0 | T | G | 53.8% | 2.3 / 18.6 | 13 | G533G (GGT→GGG) | ubiB | ubiquinone biosynthesis protein UbiB |
| * | NC_000913 | 4,296,060 | 0 | C | T | 49.3% | ‑2.8 / 112.8 | 73 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 424,518 | 0 | A | C | 38.9% | 18.9 / 12.7 | 18 | V134G (GTG→GGG) | acpH | acyl carrier protein phosphodiesterase |
| * | NC_000913 | 3,794,175 | 0 | C | G | 38.9% | 14.7 / 17.0 | 18 | G63G (GGC→GGG) | rfaD | ADP‑L‑glycero‑D‑mannoheptose 6‑epimerase |
| * | NC_000913 | 3,233,922 | 0 | G | T | 36.4% | 27.4 / 10.2 | 22 | Q75K (CAA→AAA) | higA | antitoxin/DNA‑binding transcriptional repressor HigA |
| * | NC_000913 | 2,203,745 | 0 | T | G | 36.0% | 32.7 / 14.1 | 25 | V1156G (GTC→GGC) | yehI | DUF4132 domain‑containing protein YehI |
| * | NC_000913 | 3,479,276 | 0 | G | T | 35.3% | 18.2 / 11.3 | 17 | Y444* (TAC→TAA) | kefB | K(+) : H(+) antiporter KefB |
| * | NC_000913 | 421,152 | 0 | A | . | 33.3% | 34.2 / 15.7 | 15 | coding (167/1374 nt) | proY | putative transporter ProY |
| * | NC_000913 | 1,702,245 | 0 | A | C | 33.3% | 59.0 / 11.1 | 30 | T5P (ACC→CCC) | add | adenosine deaminase |
| * | NC_000913 | 2,710,279 | 0 | A | C | 32.0% | 33.3 / 18.6 | 25 | intergenic (‑115/‑141) | rseD/nadB | rpoE leader peptide/L‑aspartate oxidase |
| * | NC_000913 | 821,440 | 0 | C | T | 31.6% | 48.7 / 19.4 | 38 | F216F (TTC→TTT) | ybhM | Bax1‑I family protein YbhM |
| * | NC_000913 | 421,151 | 0 | T | . | 31.2% | 39.4 / 15.7 | 16 | coding (166/1374 nt) | proY | putative transporter ProY |
| * | NC_000913 | 1,374,034 | 0 | G | . | 30.0% | 42.9 / 20.8 | 20 | coding (813/882 nt) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 3,196,811 | 0 | A | C | 28.1% | 70.0 / 12.1 | 32 | V944G (GTG→GGG) | glnE | fused glutamine synthetase deadenylase/glutamine synthetase adenylyltransferase |
| * | NC_000913 | 1,374,036 | 0 | T | G | 27.3% | 38.3 / 13.4 | 22 | L272R (CTC→CGC) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 1,374,038 | 0 | T | C | 27.3% | 34.0 / 10.9 | 22 | F273L (TTC→CTC) ‡ | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 4,414,906 | 0 | T | G | 26.1% | 37.6 / 17.5 | 23 | V211G (GTG→GGG) | aidB | putative acyl‑CoA dehydrogenase AidB |
| * | NC_000913 | 1,374,040 | 0 | C | T | 25.9% | 39.8 / 15.4 | 27 | F273F (TTC→TTT) ‡ | ycjO | putative ABC transporter membrane subunit YcjO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1603798 | 30 (0.680) | 4 (0.090) | 4/128 | 2.4 | 12.1% | coding (780/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC |
| ? | NC_000913 | 1603802 = | 28 (0.630) | coding (784/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC | |||||