mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 31 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 296,504 | 0 | T | G | 58.3% | ‑2.5 / 14.2 | 12 | N198T (AAC→ACC) | intF | CP4‑6 prophage; putative phage integrase |
| * | NC_000913 | 4,021,824 | 0 | T | G | 58.3% | ‑2.6 / 14.1 | 12 | G533G (GGT→GGG) | ubiB | ubiquinone biosynthesis protein UbiB |
| * | NC_000913 | 2,087,406 | 0 | A | C | 55.6% | ‑3.7 / 10.5 | 9 | W285G (TGG→GGG) | yeeY | putative DNA‑binding transcriptional regulator YeeY |
| * | NC_000913 | 2,280,704 | 0 | A | C | 52.4% | ‑2.4 / 35.4 | 21 | T25P (ACC→CCC) | radD | putative DNA repair helicase RadD |
| * | NC_000913 | 310,934 | 0 | A | C | 52.0% | 15.2 / 39.8 | 25 | F135V (TTC→GTC) | ecpR | DNA‑binding transcriptional dual regulator MatA |
| * | NC_000913 | 3,302,928 | 0 | T | G | 50.0% | 10.9 / 11.0 | 18 | V147G (GTG→GGG) | yhbV | putative peptidase YhbV |
| * | NC_000913 | 3,352,754 | 0 | A | C | 50.0% | 3.0 / 15.4 | 18 | V91G (GTG→GGG) | arcB | sensory histidine kinase ArcB |
| * | NC_000913 | 4,296,060 | 0 | C | T | 49.0% | 7.0 / 140.2 | 96 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,414,906 | 0 | T | G | 46.2% | 10.6 / 33.4 | 26 | V211G (GTG→GGG) | aidB | putative acyl‑CoA dehydrogenase AidB |
| * | NC_000913 | 2,039,701 | 0 | A | C | 40.0% | 8.8 / 13.9 | 15 | N75T (AAC→ACC) | msrP | periplasmic protein‑L‑methionine sulfoxide reductase catalytic subunit |
| * | NC_000913 | 4,020,316 | 0 | A | C | 36.0% | 34.3 / 19.0 | 25 | T31P (ACC→CCC) | ubiB | ubiquinone biosynthesis protein UbiB |
| * | NC_000913 | 395,288 | 0 | A | T | 33.3% | 26.0 / 22.1 | 21 | F334I (TTC→ATC) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 3,773,700 | 0 | A | T | 31.0% | 52.4 / 17.6 | 29 | N474Y (AAC→TAC) | mtlA | mannitol‑specific PTS enzyme IICBA component |
| * | NC_000913 | 395,291 | 0 | C | G | 30.0% | 30.0 / 18.4 | 20 | G333R (GGT→CGT) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 3,086,207 | 0 | T | G | 29.6% | 54.2 / 12.7 | 27 | G7G (GGT→GGG) | yqgC | protein YqgC |
| * | NC_000913 | 395,294 | 0 | C | G | 28.6% | 33.2 / 19.2 | 21 | G332R (GGC→CGC) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 2,795,601 | 0 | G | C | 28.1% | 67.8 / 10.2 | 32 | R450P (CGC→CCC) | gabP | 4‑aminobutyrate:H(+) symporter |
| * | NC_000913 | 3,812,386 | 0 | C | A | 25.0% | 52.6 / 12.9 | 24 | L58F (TTG→TTT) | yicR | RadC‑like JAB domain‑containing protein YicR |
| * | NC_000913 | 2,753,266 | 0 | A | C | 24.4% | 106.1 / 15.5 | 41 | H491P (CAC→CCC) | recN | DNA repair protein RecN |
| * | NC_000913 | 2,821,595 | 0 | G | T | 24.1% | 59.6 / 14.5 | 29 | A139A (GCC→GCA) | alaS | alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1603798 | 28 (0.570) | 6 (0.120) | 4/128 | 2.4 | 18.2% | coding (780/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC |
| ? | NC_000913 | 1603802 = | 26 (0.530) | coding (784/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC | |||||