mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 132 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 224,829 | 0 | C | T | 74.6% | 54.6 / 90.0 | 130 | noncoding (1059/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 4,039,477 | 0 | C | T | 74.0% | 30.8 / 52.1 | 77 | noncoding (1959/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,473 | 0 | G | A | 72.3% | 38.0 / 57.9 | 83 | noncoding (1955/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 225,003 | 0 | G | A | 72.0% | 20.5 / 35.2 | 50 | noncoding (1233/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 4,039,415 | 0 | G | A | 71.5% | 113.2 / 152.2 | 193 | noncoding (1897/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 225,548 | 0 | T | A | 71.0% | 128.9 / 60.4 | 69 | noncoding (49/76 nt) | alaV | tRNA‑Ala |
| * | NC_000913 | 4,039,361 | 0 | C | T | 69.2% | 138.4 / 172.1 | 201 | noncoding (1843/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,482 | 0 | T | C | 68.8% | 30.0 / 44.5 | 63 | noncoding (1964/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,400 | 0 | C | G | 68.7% | 164.4 / 204.3 | 201 | noncoding (1882/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,405 | 0 | T | C | 68.7% | 129.0 / 162.3 | 201 | noncoding (1887/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,372 | 0 | T | G | 68.5% | 161.6 / 196.6 | 203 | noncoding (1854/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,373 | 0 | T | G | 68.5% | 164.2 / 199.3 | 203 | noncoding (1855/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,375 | 0 | A | G | 68.5% | 131.4 / 162.8 | 203 | noncoding (1857/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,403 | 0 | G | A | 68.3% | 150.2 / 185.0 | 202 | noncoding (1885/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,376 | 0 | T | A | 67.5% | 175.7 / 210.8 | 206 | noncoding (1858/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,378 | 0 | G | C | 67.5% | 183.2 / 220.5 | 206 | noncoding (1860/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,386 | 0 | C | G | 67.3% | 183.4 / 219.9 | 205 | noncoding (1868/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,388 | 0 | C | T | 67.3% | 158.6 / 189.7 | 205 | noncoding (1870/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,391 | 0 | G | C | 67.0% | 186.0 / 222.7 | 206 | noncoding (1873/2905 nt) | rrlA | 23S ribosomal RNA |
| * | NC_000913 | 4,039,385 | 0 | C | G | 66.8% | 184.6 / 220.3 | 205 | noncoding (1867/2905 nt) | rrlA | 23S ribosomal RNA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2521177 = | 39 (0.960) | 11 (0.300) +CTCCATAATGGTGA |
3/248 | 3.8 | 28.7% | noncoding (5/76 nt) | valY | tRNA‑Val |
| ? | NC_000913 | 2729375 = | 22 (0.540) | noncoding (70/76 nt) | gltW | tRNA‑Glu | |||||
| * | ? | NC_000913 | 2521055 = | 32 (0.790) | 11 (0.300) +CTCCATAATGGTGA |
3/248 | 3.8 | 31.2% | noncoding (5/76 nt) | valX | tRNA‑Val |
| ? | NC_000913 | 2729375 = | 22 (0.540) | noncoding (70/76 nt) | gltW | tRNA‑Glu | |||||
| * | ? | NC_000913 | 2520935 = | 34 (0.830) | 11 (0.300) +CTCCATAATGGTGA |
3/248 | 3.8 | 30.4% | noncoding (5/76 nt) | valU | tRNA‑Val |
| ? | NC_000913 | 2729375 = | 22 (0.540) | noncoding (70/76 nt) | gltW | tRNA‑Glu | |||||
| * | ? | NC_000913 | 781072 = | 34 (0.830) | 11 (0.300) +CTCCATAATGGTGA |
3/248 | 3.8 | 30.4% | noncoding (5/76 nt) | valZ | tRNA‑Val |
| ? | NC_000913 | 2729375 = | 22 (0.540) | noncoding (70/76 nt) | gltW | tRNA‑Glu | |||||
| * | ? | NC_000913 | 780769 = | 48 (1.180) | 11 (0.300) +CTCCATAATGGTGA |
3/248 | 3.8 | 25.9% | noncoding (5/76 nt) | valT | tRNA‑Val |
| ? | NC_000913 | 2729375 = | 22 (0.540) | noncoding (70/76 nt) | gltW | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 904317 | 58 (1.420) | 3 (0.070) | 3/272 | 4.0 | 4.9% | coding (151/516 nt) | ybjP | DUF3828 domain‑containing lipoprotein YbjP |
| ? | NC_000913 | 904324 = | 59 (1.470) | coding (144/516 nt) | ybjP | DUF3828 domain‑containing lipoprotein YbjP | |||||