mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 44.7% | 29.2 / 40.8 | 39 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 42.5% | 22.8 / 34.8 | 40 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,800 | 0 | A | G | 42.5% | 29.1 / 33.5 | 41 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 25.5% | 63.8 / 23.1 | 51 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 39 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 4256360 = | 96 (2.860) | 7 (0.210) | 6/272 | 3.4 | 6.8% | coding (108/2424 nt) | plsB | glycerol‑3‑phosphate O‑acyltransferase |
| ? | NC_000913_3_bme_pgi | 4256386 = | 100 (3.060) | coding (82/2424 nt) | plsB | glycerol‑3‑phosphate O‑acyltransferase | |||||
| * | ? | NC_000913_3_bme_pgi | 4236217 = | 139 (4.130) | 7 (0.220) | 5/260 | 3.6 | 5.3% | intergenic (+68/‑46) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein |
| ? | NC_000913_3_bme_pgi | 4236241 = | 121 (3.880) | intergenic (+92/‑22) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein | |||||
| * | ? | NC_000913_3_bme_pgi | 783845 = | 44 (1.310) | 5 (0.160) | 5/266 | 3.7 | 10.9% | coding (680/720 nt) | pnuC | nicotinamide riboside transporter |
| ? | NC_000913_3_bme_pgi | 783878 = | 40 (1.250) | coding (713/720 nt) | pnuC | nicotinamide riboside transporter | |||||
| * | ? | NC_000913_3_bme_pgi | 4131727 = | 134 (3.990) | 4 (0.130) | 4/262 | 4.0 | 3.1% | coding (1893/2433 nt) | metL | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| ? | NC_000913_3_bme_pgi | 4131773 = | 128 (4.070) | coding (1939/2433 nt) | metL | Bifunctional aspartokinase/homoserine dehydrogenase 2 | |||||
| * | ? | NC_000913_3_bme_pgi | 3377757 = | 23 (0.680) | 4 (0.130) | 4/258 | 4.0 | 14.5% | intergenic (‑337/+58) | sspA/rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| ? | NC_000913_3_bme_pgi | 3377783 = | 26 (0.840) | intergenic (‑363/+32) | sspA/rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 | |||||
| * | ? | NC_000913_3_bme_pgi | 4168398 = | 57 (1.700) | 4 (0.120) | 4/268 | 4.1 | 6.8% | noncoding (27/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913_3_bme_pgi | 4209819 = | NA (NA) | noncoding (46/76 nt) | gltV | tRNA‑Glu | |||||
| * | ? | NC_000913_3_bme_pgi | = 4162839 | 97 (2.890) | 4 (0.130) | 4/266 | 4.1 | 4.3% | coding (432/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| ? | NC_000913_3_bme_pgi | = 4162849 | 87 (2.720) | coding (422/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase | |||||
| * | ? | NC_000913_3_bme_pgi | = 3855212 | 37 (1.100) | 4 (0.120) | 4/268 | 4.1 | 11.2% | coding (400/498 nt) | yidF | putative Cys‑type oxidative YidJ‑maturating enzyme |
| ? | NC_000913_3_bme_pgi | = 3855263 | 28 (0.870) | coding (349/498 nt) | yidF | putative Cys‑type oxidative YidJ‑maturating enzyme | |||||
| * | ? | NC_000913_3_bme_pgi | = 3357043 | 33 (0.980) | 4 (0.130) | 4/264 | 4.1 | 11.1% | coding (2319/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | NC_000913_3_bme_pgi | = 3357057 | 33 (1.040) | coding (2333/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | NC_000913_3_bme_pgi | = 2877714 | 53 (1.580) | 6 (0.190) | 4/266 | 4.1 | 11.0% | intergenic (+96/+855) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913_3_bme_pgi | = 2877718 | 47 (1.470) | intergenic (+100/+851) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||