mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 83 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 3548549 | 38 (0.770) | 9 (0.220) +23 bp |
8/236 | 4.2 | 22.5% | coding (1522/2085 nt) | malQ | 4‑alpha‑glucanotransferase (amylomaltase) |
| ? | NC_000913_3_hsa_tpiA | 3548573 = | 36 (0.730) | coding (1498/2085 nt) | malQ | 4‑alpha‑glucanotransferase (amylomaltase) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1961815 = | 57 (1.150) | 6 (0.130) | 6/262 | 5.6 | 10.2% | intergenic (+20/‑157) | argS/yecT | arginyl‑tRNA synthetase/uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1961845 = | 53 (1.150) | intergenic (+50/‑127) | argS/yecT | arginyl‑tRNA synthetase/uncharacterized protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1468596 = | NA (NA) | 5 (0.110) | 5/270 | 6.2 | 13.3% | coding (231/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_hsa_tpiA | = 1650887 | 34 (0.690) | pseudogene (43/693 nt) | insD1 | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 381910 | NA (NA) | 5 (0.110) | 5/270 | 6.2 | NA | coding (237/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_hsa_tpiA | = 381923 | NA (NA) | coding (250/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1805292 = | 33 (0.670) | 5 (0.100) | 5/276 | 6.3 | 12.6% | intergenic (+20/+33) | yniD/ydiY | uncharacterized protein/acid‑inducible putative outer membrane protein |
| ? | NC_000913_3_hsa_tpiA | 1805317 = | 37 (0.760) | intergenic (+45/+8) | yniD/ydiY | uncharacterized protein/acid‑inducible putative outer membrane protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4612310 | 43 (0.870) | 4 (0.090) | 4/260 | 6.6 | 9.1% | intergenic (+39/‑83) | ytjA/yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| ? | NC_000913_3_hsa_tpiA | = 4612313 | 40 (0.880) | intergenic (+42/‑80) | ytjA/yjjU | uncharacterized protein/putative patatin‑like family phospholipase | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3981187 = | 61 (1.230) | 4 (0.090) | 4/264 | 6.6 | 6.3% | coding (301/1386 nt) | yifK | putative APC family amino acid transporter |
| ? | NC_000913_3_hsa_tpiA | 3981219 = | 62 (1.340) | coding (333/1386 nt) | yifK | putative APC family amino acid transporter | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3648348 = | 53 (1.070) | 4 (0.090) | 4/260 | 6.6 | 7.5% | noncoding (55/84 nt) | agrB | antisense sRNA antitoxin for the DinQ toxin |
| ? | NC_000913_3_hsa_tpiA | 3648375 = | 50 (1.100) | noncoding (82/84 nt) | agrB | antisense sRNA antitoxin for the DinQ toxin | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2856434 | NA (NA) | 4 (0.090) | 4/262 | 6.6 | NA | noncoding (9/24 nt) | REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 2856440 | NA (NA) | noncoding (15/24 nt) | REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2811348 = | 40 (0.810) | 4 (0.090) | 4/264 | 6.6 | 9.2% | intergenic (+48/‑79) | mprA/emrA | transcriptional repressor of microcin B17 synthesis and multidrug efflux/multidrug efflux system |
| ? | NC_000913_3_hsa_tpiA | 2811372 = | 42 (0.910) | intergenic (+72/‑55) | mprA/emrA | transcriptional repressor of microcin B17 synthesis and multidrug efflux/multidrug efflux system | |||||