mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 42 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,480,416 | 0 | C | T | 74.1% | 38.4 / 14.6 | 27 | V64V (GTG→GTA) | kefB | K(+) : H(+) antiporter KefB |
| * | NC_000913 | 2,816,566 | 0 | T | C | 69.2% | 31.2 / 17.3 | 26 | L125L (TTA→TTG) | yqaA | DedA family protein YqaA |
| * | NC_000913 | 2,190,808 | 0 | C | T | 68.4% | 19.6 / 11.7 | 19 | G35R (GGA→AGA) | yehB | putative fimbrial usher protein YehB |
| * | NC_000913 | 2,359,915 | 0 | C | T | 68.2% | 22.1 / 15.6 | 22 | A80T (GCC→ACC) | yfaV | putative transporter YfaV |
| * | NC_000913 | 1,487,779 | 0 | T | C | 66.7% | 23.2 / 17.3 | 24 | F182S (TTC→TCC) | ydcF | DUF218 domain‑containing protein YdcF |
| * | NC_000913 | 4,185,428 | 0 | C | T | 64.7% | 32.0 / 28.1 | 34 | P27S (CCA→TCA) | rpoC | RNA polymerase subunit beta' |
| * | NC_000913 | 2,362,667 | 0 | G | A | 64.3% | 18.6 / 24.9 | 28 | L323L (CTG→TTG) | yfaY | IPR008135 CinA family protein YfaY |
| * | NC_000913 | 3,377,490 | 0 | A | G | 63.3% | 21.7 / 27.0 | 30 | intergenic (‑70/+325) | sspA/rpsI | stringent starvation protein A/30S ribosomal subunit protein S9 |
| * | NC_000913 | 3,493,564 | 0 | G | A | 62.5% | 28.2 / 40.3 | 40 | V333I (GTC→ATC) | tsgA | putative transporter TsgA |
| * | NC_000913 | 4,076,055 | 0 | C | T | 62.5% | 26.0 / 25.2 | 32 | A168V (GCC→GTC) | yihX | alpha‑D‑glucose‑1‑phosphate phosphatase |
| * | NC_000913 | 3,800,601 | 0 | A | G | 61.9% | 14.3 / 17.0 | 21 | I122T (ATC→ACC) | waaY | lipopolysaccharide core heptose (II) kinase |
| * | NC_000913 | 411,916 | 0 | A | C | 60.9% | 25.4 / 22.8 | 23 | L189R (CTG→CGG) | araJ | putative transport protein AraJ |
| * | NC_000913 | 3,874,408 | 0 | C | T | 59.5% | 17.9 / 40.6 | 37 | D23N (GAC→AAC) | dgoK | 2‑dehydro‑3‑deoxygalactonokinase |
| * | NC_000913 | 3,701,060 | 0 | G | A | 59.3% | 11.6 / 28.5 | 27 | M166I (ATG→ATA) | yhjV | putative transporter YhjV |
| * | NC_000913 | 2,818,467 | 0 | A | G | 57.1% | 8.5 / 31.4 | 28 | intergenic (‑193/+6) | argY/argV | tRNA‑Arg/tRNA‑Arg |
| * | NC_000913 | 3,099,362 | 0 | G | T | 57.1% | ‑2.7 / 18.2 | 14 | V68V (GTC→GTA) | yggM | DUF1202 domain‑containing protein YggM |
| * | NC_000913 | 4,295,982 | 0 | T | C | 56.2% | ‑5.9 / 16.2 | 16 | intergenic (+188/+454) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 408,831 | 0 | C | T | 54.5% | 0.9 / 25.6 | 22 | pseudogene (223/342 nt) | ykiA | DUF2773 domain‑containing protein YkiA |
| * | NC_000913 | 4,322,390 | 0 | T | C | 53.7% | 7.1 / 52.8 | 41 | P11P (CCA→CCG) | phnF | putative transcriptional regulator PhnF |
| * | NC_000913 | 3,397,177 | 0 | A | G | 52.9% | 2.4 / 43.5 | 34 | Y207H (TAT→CAT) | rng | RNase G |