mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 39,246 | C→T | A630T (GCT→ACT) | mecA ← | penicillin binding protein 2 prime |
| RA | 225,710 | C→G | T266R (ACA→AGA) | murQ → | possible sugar phosphate isomerase |
| RA | 367,644 | G→T | intergenic (‑96/‑20) | nanA ← / → nagC | N‑acetylneuraminate lyase/possible transcriptional regulator |
| RA | 479,553 | G→A | A194T (GCA→ACA) | USA300HOU_0458 → | hypothetical protein |
| RA | 638,614 | G→T | T14K (ACA→AAA) | thiD ← | phosphomethylpyrimidine kinase |
| RA | 707,879 | A→T | L11I (TTA→ATA) | mntB ← | ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 790,778 | G→A | intergenic (+277/‑197) | kipA → / → ltaS | possible allophanate hydrolase subunit 2/possible phosphatidylglycerol‑‑membrane‑oligosaccharide glycerophosphotransferase |
| RA | 849,263 | C→A | A130E (GCA→GAA) | yvcJ → | ATP‑binding protein |
| RA | 880,093 | G→T | intergenic (+271/‑70) | USA300HOU_0822 → / → nuc | hypothetical protein/micrococcal nuclease |
| RA | 1,064,016 | G→A | A158V (GCA→GTA) | brpA ← | LytR family transcriptional regulator |
| RA | 1,232,465 | G→C | A124P (GCG→CCG) | prkC → | non‑specific serine/threonine protein kinase |
| RA | 1,233,332 | C→A | P413T (CCT→ACT) | prkC → | non‑specific serine/threonine protein kinase |
| RA | 1,416,458 | A→T | I216N (ATT→AAT) | oppD ← | oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 1,440,007 | Δ1 bp | coding (34/201 nt) | cspA ← | cold shock protein CspA |
| RA | 1,474,639 | C→G | A9129P (GCA→CCA) | ebh ← | extracellular matrix binding protein |
| RA | 1,481,355 | G→T | A6890E (GCA→GAA) | ebh ← | extracellular matrix binding protein |
| RA | 1,513,930 | A→T | L413F (TTA→TTT) | USA300HOU_1379 → | hypothetical membrane protein |
| RA | 1,646,189 | G→C | A155G (GCA→GGA) | pepP ← | M24B family Xaa‑Pro dipeptidase |
| RA | 1,744,454 | C→T | G73D (GGC→GAC) | apt ← | adenine phosphoribosyltransferase |
| RA | 1,775,439 | C→T | G362D (GGT→GAT) | clpX ← | S14 family endopeptidase ClpX |
| RA | 1,797,772 | G→C | R7G (CGC→GGC) | phoR ← | sensor histidine kinase |
| RA | 2,010,363 | C→T | C146Y (TGT→TAT) | ygaD ← | ABC superfamily ATP binding cassette transporter, membrane protein |
| RA | 2,279,705 | G→A | intergenic (+1373/+6659) | mtlD → / ← glmM | mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase |
| RA | 2,532,298 | A→T | T15T (ACA→ACT) | murN → | FemAB family peptidoglycan biosynthesis protein |
| RA | 2,856,087 | T→A | P80P (CCT→CCA) | USA300HOU_2698 → | hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 512620 = | 29 (1.060) | 20 (1.040) +40 bp |
18/190 | 0.2 | 49.5% | intergenic (+688/‑173) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| ? | CP000730 | 1998278 = | NA (NA) | intergenic (‑6/+5) | USA300HOU_t0050/rrf4 | tRNA‑Val/5S ribosomal RNA | |||||