mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 55.4% | 13.6 / 70.4 | 57 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,516 | 0 | C | A | 38.5% | 70.2 / 43.1 | 53 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,512 | 0 | A | G | 35.9% | 57.1 / 43.1 | 53 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 110,660 | 0 | T | A | 25.7% | 68.1 / 22.4 | 35 | I173I (ATT→ATA) | USA300HOU_0109 | staphylococcal tandem lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 365029 = | 29 (1.060) | 4 (0.160) | 4/246 | 3.4 | 13.0% | intergenic (+39/+66) | nupC/USA300HOU_0334 | possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter |
| ? | CP000730 | 365083 = | 27 (1.080) | intergenic (+93/+12) | nupC/USA300HOU_0334 | possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter | |||||
| * | ? | CP000730 | 2492466 = | 28 (1.020) | 3 (0.120) | 3/248 | 3.9 | 11.0% | intergenic (+9/+37) | yhfP/USA300HOU_2354 | possible zinc (Zn2+) dependent dehydrogenase/possible acetyltransferase |
| ? | CP000730 | 2492499 = | 23 (0.920) | intergenic (+42/+4) | yhfP/USA300HOU_2354 | possible zinc (Zn2+) dependent dehydrogenase/possible acetyltransferase | |||||
| * | ? | CP000730 | = 2182185 | 33 (1.210) | 3 (0.120) | 3/244 | 3.9 | 9.1% | intergenic (‑474/+173) | USA300HOU_t0054/sprL | tRNA‑Leu/hypothetical protein |
| ? | CP000730 | = 2182203 | 30 (1.220) | intergenic (‑492/+155) | USA300HOU_t0054/sprL | tRNA‑Leu/hypothetical protein | |||||
| * | ? | CP000730 | 830841 = | 24 (0.880) | 3 (0.120) | 3/246 | 3.9 | 11.6% | intergenic (+10/‑404) | raiA/secA1 | possible ribosome‑associated inhibitor protein Y/Sec family Type I general secretory pathway preprotein translocase subunit SecA |
| ? | CP000730 | 830871 = | 24 (0.960) | intergenic (+40/‑374) | raiA/secA1 | possible ribosome‑associated inhibitor protein Y/Sec family Type I general secretory pathway preprotein translocase subunit SecA | |||||
| * | ? | CP000730 | = 2832367 | 30 (1.100) | 3 (0.120) | 3/254 | 4.0 | 9.6% | coding (298/2046 nt) | lip | triacylglycerol lipase |
| ? | CP000730 | = 2832375 | 28 (1.090) | coding (290/2046 nt) | lip | triacylglycerol lipase | |||||
| * | ? | CP000730 | 298069 = | 41 (1.500) | 3 (0.120) | 3/250 | 4.0 | 7.0% | intergenic (+208/‑220) | tagB1/tagF | glycosyl/glycerophosphate transferase/CDP‑glycerol glycerophosphotransferase |
| ? | CP000730 | 298125 = | 42 (1.660) | intergenic (+264/‑164) | tagB1/tagF | glycosyl/glycerophosphate transferase/CDP‑glycerol glycerophosphotransferase | |||||
| * | ? | CP000730 | = 2864298 | 22 (0.810) | 3 (0.110) | 3/258 | 4.1 | 11.5% | intergenic (+62/+1487) | USA300HOU_2709/USA300HOU_2710 | hypothetical protein/hypothetical membrane protein |
| ? | CP000730 | = 2864313 | 25 (0.960) | intergenic (+77/+1472) | USA300HOU_2709/USA300HOU_2710 | hypothetical protein/hypothetical membrane protein | |||||
| * | ? | CP000730 | 2595468 = | 16 (0.590) | 3 (0.110) | 3/260 | 4.1 | 15.2% | coding (423/936 nt) | celM | oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein |
| ? | CP000730 | 2595506 = | 18 (0.680) | coding (385/936 nt) | celM | oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein | |||||
| * | ? | CP000730 | 559607 = | NA (NA) | 3 (0.110) +A |
3/268 | 4.2 | 9.7% | noncoding (651/2921 nt) | rrl2 | 23S ribosomal RNA |
| ? | CP000730 | 683996 = | 28 (1.020) | coding (327/1047 nt) | USA300HOU_0628 | hypothetical protein | |||||