mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 49.7% | 16.9 / 276.8 | 193 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,516 | 0 | C | A | 36.6% | 197.6 / 145.7 | 142 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,512 | 0 | A | G | 36.1% | 147.4 / 140.6 | 146 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 108 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1205323 | 72 (0.810) | 40 (0.630) +38 bp |
10/194 | 6.3 | 43.6% | intergenic (+459/‑365) | yfiE/lspA | possible lactoylglutathione lyase/A8 family signal peptidase II |
| ? | CP000730 | = 2072043 | 72 (0.810) | intergenic (+538/+35) | ykgB/USA300HOU_1927 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000730 | = 1205323 | 72 (0.810) | 40 (0.630) +38 bp |
10/194 | 6.3 | 43.6% | intergenic (+459/‑365) | yfiE/lspA | possible lactoylglutathione lyase/A8 family signal peptidase II |
| ? | CP000730 | = 1443739 | NA (NA) | intergenic (‑312/+41) | USA300HOU_1341/brnQ2 | IS1272 transposase/LIVCS family branched chain amino acid:cation symporter | |||||
| * | ? | CP000730 | 443919 = | 90 (1.020) | 17 (0.210) | 14/242 | 6.4 | 18.3% | intergenic (‑219/+42) | USA300HOU_0417/USA300HOU_0419 | transposase/hypothetical protein |
| ? | CP000730 | 443953 = | 71 (0.900) | intergenic (‑253/+8) | USA300HOU_0417/USA300HOU_0419 | transposase/hypothetical protein | |||||
| * | ? | CP000730 | = 1205323 | 72 (0.810) | 39 (0.610) +38 bp |
9/194 | 6.7 | 41.0% | intergenic (+459/‑365) | yfiE/lspA | possible lactoylglutathione lyase/A8 family signal peptidase II |
| ? | CP000730 | 2478252 = | 84 (0.950) | intergenic (+139/+932) | USA300HOU_2340/htrB | hypothetical membrane protein/hemin ABC superfamily ATP binding cassette transporter, ABC protein | |||||
| * | ? | CP000730 | = 1205323 | 72 (0.810) | 39 (0.610) +38 bp |
9/194 | 6.7 | 42.8% | intergenic (+459/‑365) | yfiE/lspA | possible lactoylglutathione lyase/A8 family signal peptidase II |
| ? | CP000730 | 1426517 = | 73 (0.830) | intergenic (‑248/+724) | pstS/yitL | phosphate ABC superfamily ATP binding cassette transporter, binding protein/hypothetical protein | |||||
| * | ? | CP000730 | 515911 = | NA (NA) | 18 (0.210) | 14/256 | 6.8 | NA | noncoding (1206/2921 nt) | rrl1 | 23S ribosomal RNA |
| ? | CP000730 | 515928 = | NA (NA) | noncoding (1223/2921 nt) | rrl1 | 23S ribosomal RNA | |||||
| * | ? | CP000730 | 2179606 = | NA (NA) | 22 (0.260) | 13/256 | 7.1 | 100% | intergenic (‑50/+262) | rrl4/rrs4 | 23S ribosomal RNA/16S ribosomal RNA |
| ? | CP000730 | 2179610 = | 0 (0.000) | intergenic (‑54/+258) | rrl4/rrs4 | 23S ribosomal RNA/16S ribosomal RNA | |||||
| * | ? | CP000730 | 2001480 = | 6 (0.070) | 22 (0.260) | 13/256 | 7.1 | 79.5% | intergenic (‑89/+127) | rrl3/USA300HOU_t0051 | 23S ribosomal RNA/tRNA‑Ala |
| ? | CP000730 | 2179617 = | NA (NA) | intergenic (‑61/+251) | rrl4/rrs4 | 23S ribosomal RNA/16S ribosomal RNA | |||||
| * | ? | CP000730 | = 558914 | 6 (0.070) | 22 (0.260) | 13/256 | 7.1 | 79.5% | intergenic (+127/‑43) | USA300HOU_t0012/rrl2 | tRNA‑Ile/23S ribosomal RNA |
| ? | CP000730 | 2179617 = | NA (NA) | intergenic (‑61/+251) | rrl4/rrs4 | 23S ribosomal RNA/16S ribosomal RNA | |||||
| * | ? | CP000730 | = 514606 | 1 (0.010) | 22 (0.260) | 13/256 | 7.1 | 86.4% | intergenic (+274/‑100) | rrs1/rrl1 | 16S ribosomal RNA/23S ribosomal RNA |
| ? | CP000730 | 2001487 = | 6 (0.070) | intergenic (‑96/+120) | rrl3/USA300HOU_t0051 | 23S ribosomal RNA/tRNA‑Ala | |||||