mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,190 | 0 | A | G | 23.9% | 148.5 / 58.8 | 123 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 23.8% | 183.9 / 62.9 | 126 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 22.1% | 133.2 / 59.1 | 123 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 67 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 189 (0.710) | 63 (0.330) | 15/390 | 21.4 | 31.5% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 140 (0.740) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4542682 = | 336 (1.260) | 23 (0.090) | 21/532 | 24.3 | 7.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 286 (1.110) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 334 (1.250) | 14 (0.050) | 14/532 | 28.4 | 4.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 285 (1.100) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2068406 | 310 (1.160) | 10 (0.040) | 10/514 | 30.5 | 3.3% | pseudogene (14/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913 | = 2068411 | 296 (1.190) | pseudogene (9/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4541538 = | 314 (1.180) | 11 (0.040) | 11/536 | 30.7 | 3.4% | coding (582/603 nt) | fimB | tyrosine recombinase/inversion of on/off regulator of fimA |
| ? | NC_000913 | 4541553 = | 316 (1.220) | coding (597/603 nt) | fimB | tyrosine recombinase/inversion of on/off regulator of fimA | |||||
| * | ? | NC_000913 | = 1240065 | 280 (1.050) | 10 (0.040) | 10/528 | 31.1 | 3.6% | intergenic (+116/+270) | dadX/cvrA | alanine racemase, catabolic, PLP‑binding/putative cation/proton antiporter |
| ? | NC_000913 | = 1240072 | 274 (1.070) | intergenic (+123/+263) | dadX/cvrA | alanine racemase, catabolic, PLP‑binding/putative cation/proton antiporter | |||||
| * | ? | NC_000913 | 2904386 = | 292 (1.090) | 11 (0.040) | 10/536 | 31.4 | 3.7% | intergenic (+1012/+361) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | NC_000913 | 2904404 = | 288 (1.110) | intergenic (+1030/+343) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | NC_000913 | 1865670 = | 261 (0.980) | 11 (0.040) | 9/526 | 31.8 | 4.1% | intergenic (‑34/+56) | yeaE/mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| ? | NC_000913 | 1865695 = | 259 (1.020) | intergenic (‑59/+31) | yeaE/mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery | |||||
| * | ? | NC_000913 | 1334846 = | 293 (1.100) | 10 (0.040) | 9/532 | 32.0 | 3.3% | intergenic (+17/‑278) | cysB/ymiA | N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor/uncharacterized protein |
| ? | NC_000913 | 1334874 = | 294 (1.140) | intergenic (+45/‑250) | cysB/ymiA | N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor/uncharacterized protein | |||||
| * | ? | NC_000913 | = 2349910 | 270 (1.010) | 8 (0.030) | 8/530 | 32.8 | 3.0% | intergenic (+17/+25) | yfaH/glpQ | pseudogene/periplasmic glycerophosphodiester phosphodiesterase |
| ? | NC_000913 | = 2349916 | 265 (1.030) | intergenic (+23/+19) | yfaH/glpQ | pseudogene/periplasmic glycerophosphodiester phosphodiesterase | |||||