mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 33.8% | 66.0 / 51.8 | 69 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 29.2% | 49.4 / 34.5 | 65 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 25.8% | 65.3 / 32.6 | 65 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 137 (0.980) | 11 (0.080) | 11/540 | 13.7 | 8.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 122 (0.930) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4542682 = | 187 (1.340) | 8 (0.060) | 8/554 | 15.8 | 4.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 196 (1.450) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2971145 | 154 (1.100) | 8 (0.060) | 7/560 | 16.6 | 5.1% | intergenic (+12/‑126) | ygdQ/ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| ? | NC_000913 | = 2971159 | 146 (1.070) | intergenic (+26/‑112) | ygdQ/ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein | |||||
| * | ? | NC_000913 | 4250507 = | 155 (1.110) | 6 (0.040) | 5/560 | 18.0 | 3.9% | intergenic (+33/‑196) | malM/yjbI | maltose regulon periplasmic protein/pseudogene, SopA‑related, pentapeptide repeats‑containing |
| ? | NC_000913 | 4250527 = | 147 (1.080) | intergenic (+53/‑176) | malM/yjbI | maltose regulon periplasmic protein/pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||
| * | ? | NC_000913 | = 2015666 | 163 (1.170) | 6 (0.040) | 5/560 | 18.0 | 3.6% | coding (787/996 nt) | fliG | flagellar motor switching and energizing component |
| ? | NC_000913 | = 2015736 | 159 (1.170) | coding (857/996 nt) | fliG | flagellar motor switching and energizing component | |||||
| * | ? | NC_000913 | = 1761333 | 117 (0.840) | 5 (0.040) | 5/556 | 18.0 | 3.9% | coding (459/1272 nt) | sufD | component of SufBCD Fe‑S cluster assembly scaffold |
| ? | NC_000913 | = 1761458 | 133 (0.980) | coding (334/1272 nt) | sufD | component of SufBCD Fe‑S cluster assembly scaffold | |||||
| * | ? | NC_000913 | = 1711380 | 146 (1.050) | 5 (0.040) | 5/556 | 18.0 | 3.5% | coding (553/696 nt) | rsxE | SoxR iron‑sulfur cluster reduction factor component; electron transport inner membrane NADH‑quinone reductase |
| ? | NC_000913 | = 1711427 | 132 (0.970) | coding (600/696 nt) | rsxE | SoxR iron‑sulfur cluster reduction factor component; electron transport inner membrane NADH‑quinone reductase | |||||
| * | ? | NC_000913 | = 1237052 | 154 (1.100) | 5 (0.040) | 5/562 | 18.1 | 3.2% | coding (190/1533 nt) | ycgB | SpoVR family stationary phase protein |
| ? | NC_000913 | = 1237064 | 155 (1.130) | coding (178/1533 nt) | ycgB | SpoVR family stationary phase protein | |||||
| * | ? | NC_000913 | 1688460 = | 145 (1.040) | 5 (0.040) | 5/570 | 18.3 | 3.4% | intergenic (‑83/‑116) | fumA/manA | fumarate hydratase (fumarase A), aerobic Class I/mannose‑6‑phosphate isomerase |
| ? | NC_000913 | 1688484 = | 136 (0.980) | intergenic (‑107/‑92) | fumA/manA | fumarate hydratase (fumarase A), aerobic Class I/mannose‑6‑phosphate isomerase | |||||
| * | ? | NC_000913 | 2211179 = | 125 (0.900) | 4 (0.030) | 4/558 | 18.8 | 3.1% | intergenic (+79/‑46) | yehQ/yehR | pseudogene/lipoprotein, DUF1307 family |
| ? | NC_000913 | 2211196 = | 128 (0.940) | intergenic (+96/‑29) | yehQ/yehR | pseudogene/lipoprotein, DUF1307 family | |||||