mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 28.6% | 134.3 / 53.3 | 97 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 25.3% | 72.9 / 39.0 | 84 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 25.0% | 64.2 / 42.6 | 84 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 26 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 215 (1.250) | 15 (0.090) | 15/554 | 15.4 | 6.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 199 (1.200) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1096961 = | 125 (0.730) | 32 (0.260) | 6/412 | 16.8 | 26.9% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 84 (0.680) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 3798233 | 198 (1.160) | 10 (0.060) | 9/546 | 18.6 | 5.0% | intergenic (+26/+6) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798235 | 188 (1.150) | intergenic (+28/+4) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis | |||||
| * | ? | NC_000913 | = 2753985 | 185 (1.080) | 8 (0.050) | 8/544 | 19.2 | 4.3% | intergenic (+39/+23) | bamE/ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein |
| ? | NC_000913 | = 2753986 | 180 (1.100) | intergenic (+40/+22) | bamE/ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein | |||||
| * | ? | NC_000913 | 2081678 = | 178 (1.040) | 7 (0.040) | 7/552 | 20.1 | 3.9% | coding (870/1167 nt) | dacD | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| ? | NC_000913 | 2081699 = | 176 (1.060) | coding (849/1167 nt) | dacD | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b | |||||
| * | ? | NC_000913 | = 4477269 | 198 (1.160) | 6 (0.040) | 6/552 | 20.8 | 3.0% | intergenic (+18/+38) | yjgL/argI | SopA‑central‑domain‑like hexapeptide repeat protein/ornithine carbamoyltransferase 1 |
| ? | NC_000913 | = 4477280 | 191 (1.160) | intergenic (+29/+27) | yjgL/argI | SopA‑central‑domain‑like hexapeptide repeat protein/ornithine carbamoyltransferase 1 | |||||
| * | ? | NC_000913 | = 2757417 | 219 (1.280) | 6 (0.040) | 6/550 | 20.8 | 2.8% | intergenic (+17/+227) | intA/yfjH | CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2757421 | 208 (1.260) | intergenic (+21/+223) | intA/yfjH | CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 1553950 | 158 (0.920) | 6 (0.040) | 5/554 | 21.7 | 3.7% | intergenic (‑112/+22) | adhP/maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme |
| ? | NC_000913 | = 1553956 | 160 (0.960) | intergenic (‑118/+16) | adhP/maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme | |||||
| * | ? | NC_000913 | 543199 = | 185 (1.080) | 5 (0.030) | 5/556 | 21.8 | 2.7% | intergenic (+166/+62) | glxK/allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| ? | NC_000913 | 543219 = | 178 (1.070) | intergenic (+186/+42) | glxK/allE | glycerate kinase II/S‑ureidoglycine aminohydrolase | |||||
| * | ? | NC_000913 | 105361 = | 162 (0.950) | 4 (0.020) | 4/548 | 22.4 | 2.5% | coding (57/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein |
| ? | NC_000913 | = 105357 | 157 (0.960) | coding (53/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein | |||||