mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 460 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,206,435 | 0 | C | T | 52.5% | 27.3 / 85.7 | 59 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 599,576 | 0 | T | G | 52.3% | 71.2 / 115.6 | 65 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 357,890 | 0 | C | A | 48.9% | 31.2 / 26.2 | 47 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,337,723 | 0 | A | C | 48.3% | 58.9 / 30.4 | 61 | G566G (GGT→GGG) | gyrA | DNA gyrase (type II topoisomerase), subunit A |
| * | NC_000913 | 6,964 | 0 | A | C | 47.8% | 60.4 / 18.9 | 46 | G332G (GGT→GGG) | yaaJ | putative transporter |
| * | NC_000913 | 2,421,443 | 0 | A | C | 47.2% | 76.4 / 20.2 | 53 | Y40S (TAC→TCC) | folX | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| * | NC_000913 | 2,903,692 | 0 | C | A | 46.8% | 53.6 / 57.0 | 62 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 4,538,109 | 0 | A | C | 46.8% | 117.5 / 31.8 | 77 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 3,443,277 | 0 | A | C | 46.5% | 105.0 / 25.3 | 71 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 1,097,581 | 0 | A | G | 46.0% | 84.6 / 11.4 | 63 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 3,850,007 | 0 | G | A | 45.5% | 38.8 / 25.1 | 44 | P44S (CCG→TCG) | uhpB | sensory histidine kinase in two‑component regulatory sytem with UhpA |
| * | NC_000913 | 1,969,794 | 0 | A | C | 45.1% | 68.1 / 19.6 | 52 | G397G (GGT→GGG) | tap | methyl‑accepting protein IV |
| * | NC_000913 | 987,494 | 0 | T | G | 44.9% | 102.6 / 25.2 | 70 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 1,622,816 | 0 | G | A | 44.3% | 44.3 / 60.9 | 61 | intergenic (+75/+144) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 328,791 | 0 | A | G | 44.0% | 58.8 / 19.3 | 50 | S182P (TCC→CCC) | betI | choline‑inducible betIBA‑betT divergent operon transcriptional repressor |
| * | NC_000913 | 357,880 | 0 | T | C | 43.8% | 56.0 / 17.9 | 48 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,825,056 | 0 | G | A | 43.5% | 79.2 / 30.3 | 62 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 514,611 | 0 | C | T | 43.1% | 76.6 / 28.2 | 58 | K83K (AAG→AAA) | ybbJ | inner membrane protein; stimulator of the QmcA suppressor of ftsH‑htpX |
| * | NC_000913 | 1,376,505 | 0 | A | C | 42.9% | 90.6 / 13.7 | 56 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 4,378,802 | 0 | A | C | 42.9% | 102.3 / 15.2 | 64 | V48G (GTA→GGA) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |