mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 513 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 354,288 | 0 | T | G | 59.7% | 46.1 / 83.4 | 62 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 354,282 | 0 | T | G | 49.2% | 77.8 / 12.1 | 63 | V526G (GTT→GGT) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 357,880 | 0 | T | C | 47.6% | 41.3 / 16.1 | 42 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 941,713 | 0 | T | G | 47.5% | 78.8 / 22.5 | 61 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 357,890 | 0 | C | A | 45.5% | 44.1 / 19.4 | 44 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 650,458 | 0 | A | G | 45.3% | 74.2 / 10.8 | 54 | T11T (ACT→ACC) | citE | citrate lyase, citryl‑ACP lyase (beta) subunit |
| * | NC_000913 | 3,720 | 0 | T | G | 44.9% | 71.5 / 12.0 | 49 | V307G (GTA→GGA) | thrB | homoserine kinase |
| * | NC_000913 | 1,576,077 | 0 | C | A | 44.8% | 103.2 / 36.1 | 67 | D515Y (GAT→TAT) | yddB | putative TonB‑dependent outer membrane receptor |
| * | NC_000913 | 1,842,914 | 0 | A | G | 44.4% | 45.3 / 20.8 | 45 | M182V (ATG→GTG) | gdhA | glutamate dehydrogenase, NADP‑specific |
| * | NC_000913 | 4,555,106 | 0 | C | A | 44.4% | 80.4 / 25.9 | 54 | N177K (AAC→AAA) | uxuR | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| * | NC_000913 | 907,602 | 0 | A | C | 44.1% | 111.7 / 18.6 | 69 | G227G (GGT→GGG) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 599,576 | 0 | T | G | 44.0% | 67.1 / 29.6 | 50 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 3,206,435 | 0 | C | T | 43.9% | 67.7 / 39.8 | 66 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 650,464 | 0 | A | T | 43.6% | 73.6 / 25.7 | 55 | R9R (CGT→CGA) | citE | citrate lyase, citryl‑ACP lyase (beta) subunit |
| * | NC_000913 | 1,376,505 | 0 | A | C | 43.5% | 111.8 / 12.4 | 62 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 3,177,748 | 0 | C | A | 43.4% | 59.0 / 31.7 | 53 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 357,873 | 0 | C | T | 43.2% | 44.6 / 22.5 | 45 | S273N (AGC→AAC) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,730 | 0 | C | A | 43.1% | 95.4 / 24.4 | 52 | N310K (AAC→AAA) | thrB | homoserine kinase |
| * | NC_000913 | 1,755,871 | 0 | T | A | 42.9% | 72.9 / 35.3 | 56 | G58G (GGT→GGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 1,506,020 | 0 | C | A | 42.6% | 102.5 / 25.8 | 54 | G21C (GGC→TGC) | ydcO | BenE family inner membrane putative transporter |