mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 263 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 535,920 | 0 | C | T | 58.5% | 90.8 / ‑2.7 | 54 | R71C (CGC→TGC) | hyi | hydroxypyruvate isomerase |
| * | NC_000913 | 357,890 | 0 | C | A | 54.5% | 9.5 / 44.0 | 33 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 354,288 | 0 | T | G | 48.9% | 65.0 / 11.7 | 47 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 535,901 | 0 | T | G | 48.3% | 70.1 / 12.4 | 60 | G64G (GGT→GGG) | hyi | hydroxypyruvate isomerase |
| * | NC_000913 | 2,678,039 | 0 | T | G | 47.7% | 42.9 / 19.6 | 44 | N108T (AAC→ACC) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 599,576 | 0 | T | G | 46.5% | 53.9 / 19.2 | 43 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 1,397,830 | 0 | T | C | 45.9% | 67.3 / 22.6 | 61 | I265V (ATT→GTT) | uspE | stress‑induced protein |
| * | NC_000913 | 1,764,774 | 0 | G | A | 45.8% | 46.9 / 20.3 | 48 | intergenic (‑388/+160) | sufA/ydiH | Fe‑S cluster assembly protein/uncharacterized protein |
| * | NC_000913 | 287,172 | 0 | G | C | 45.6% | 50.6 / 21.5 | 47 | P128P (CCG→CCC) | yagH | CP4‑6 prophage; putative xylosidase/arabinosidase |
| * | NC_000913 | 2,228,275 | 0 | T | C | 45.1% | 45.0 / 13.1 | 52 | pseudogene (335/1287 nt) | mdtQ | pseudogene; putative channel/filament proteins |
| * | NC_000913 | 2,348,633 | 0 | T | G | 44.9% | 72.9 / 11.9 | 49 | G40G (GGT→GGG) | yfaE | ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance |
| * | NC_000913 | 357,880 | 0 | T | C | 44.8% | 27.0 / 10.3 | 29 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,740,746 | 0 | C | T | 43.9% | 40.7 / 14.5 | 42 | V135V (GTG→GTA) | aroF | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible |
| * | NC_000913 | 646,747 | 0 | T | G | 43.5% | 100.7 / 11.3 | 63 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 2,421,443 | 0 | A | C | 43.1% | 82.5 / 11.8 | 51 | Y40S (TAC→TCC) | folX | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| * | NC_000913 | 753,125 | 0 | T | A | 42.6% | 84.6 / 33.6 | 61 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 357,875 | 0 | A | T | 42.4% | 41.4 / 12.1 | 33 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 4,604,350 | 0 | C | T | 42.4% | 32.0 / 11.8 | 33 | S64F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 2,678,043 | 0 | C | T | 42.2% | 31.5 / 26.1 | 45 | E107K (GAA→AAA) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 3,412,898 | 0 | C | T | 41.1% | 39.4 / 50.3 | 56 | A190T (GCC→ACC) | acrS | acrAB operon transcriptional repressor |