mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 222 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 884,346 | 0 | C | G | 50.0% | 47.2 / 10.7 | 36 | A225G (GCG→GGG) | mdfA | multidrug efflux system protein |
| * | NC_000913 | 646,747 | 0 | T | G | 48.3% | 68.6 / 20.7 | 61 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 29,496 | 0 | T | A | 48.1% | 62.9 / 30.9 | 54 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 298,960 | 0 | A | C | 46.8% | 62.9 / 14.9 | 48 | Y659D (TAT→GAT) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 213,341 | 0 | A | G | 46.7% | 68.5 / 22.2 | 61 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 45.3% | 59.2 / 42.9 | 64 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 2,483,268 | 0 | T | A | 43.4% | 48.1 / 25.8 | 53 | L24F (TTA→TTT) | emrK | multidrug resistance efflux pump membrane fusion protein |
| * | NC_000913 | 3,177,748 | 0 | C | A | 43.4% | 49.3 / 31.2 | 55 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 1,510,395 | 0 | C | A | 42.9% | 49.3 / 27.5 | 42 | S131R (AGC→AGA) | ydcR | putative DNA‑binding transcriptional regulator and putative aminotransferase |
| * | NC_000913 | 3,601,176 | 0 | T | C | 42.9% | 41.9 / 16.8 | 37 | E304G (GAA→GGA) | ftsX | putative ABC transporter permease |
| * | NC_000913 | 3,423,290 | 0 | A | C | 42.3% | 56.9 / 17.9 | 54 | intergenic (+96/+133) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 29,486 | 0 | C | A | 41.8% | 102.2 / 25.1 | 55 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 941,713 | 0 | T | G | 41.7% | 66.0 / 23.6 | 48 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 2,984,441 | 0 | A | C | 41.7% | 50.3 / 14.3 | 36 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 1,376,505 | 0 | A | C | 41.5% | 53.3 / 14.9 | 41 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 786,855 | 0 | A | C | 41.0% | 87.0 / 10.2 | 62 | G247G (GGT→GGG) | gpmA | phosphoglyceromutase 1 |
| * | NC_000913 | 925,900 | 0 | A | G | 40.9% | 63.3 / 16.0 | 44 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 650,464 | 0 | A | T | 40.8% | 69.6 / 19.6 | 49 | R9R (CGT→CGA) | citE | citrate lyase, citryl‑ACP lyase (beta) subunit |
| * | NC_000913 | 599,576 | 0 | T | G | 40.7% | 100.3 / 19.1 | 59 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 2,096,090 | 0 | A | G | 40.4% | 83.3 / 10.8 | 57 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase, catalytic subunit with HisH |