mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 209 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,443,277 | 0 | A | C | 50.0% | 67.6 / 17.3 | 54 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 1,825,056 | 0 | G | A | 44.3% | 96.7 / 41.9 | 79 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 436,516 | 0 | C | A | 44.3% | 64.3 / 31.8 | 61 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 3,665,702 | 0 | C | A | 44.1% | 68.2 / 31.8 | 60 | A37S (GCG→TCG) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| * | NC_000913 | 213,341 | 0 | A | G | 43.5% | 83.0 / 17.4 | 62 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 3,508,662 | 0 | T | A | 42.5% | 57.8 / 13.6 | 40 | E384D (GAA→GAT) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 2,571,036 | 0 | T | G | 42.2% | 104.7 / 10.7 | 65 | N239T (AAC→ACC) | eutE | aldehyde oxidoreductase, ethanolamine utilization protein |
| * | NC_000913 | 907,602 | 0 | A | C | 41.5% | 81.3 / 15.7 | 53 | G227G (GGT→GGG) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 1,825,061 | 0 | G | A | 40.7% | 109.7 / 42.8 | 81 | intergenic (‑124/+79) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 907,559 | 0 | T | C | 40.4% | 87.3 / 11.9 | 57 | I242V (ATT→GTT) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 501,564 | 0 | A | C | 40.0% | 102.9 / 16.6 | 60 | *559E (TAA→GAA) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 1,312,213 | 0 | G | A | 40.0% | 49.0 / 28.7 | 45 | L12F (CTT→TTT) | yciA | acyl‑CoA esterase |
| * | NC_000913 | 2,248,424 | 0 | C | A | 39.2% | 79.7 / 24.8 | 51 | V37F (GTT→TTT) | lysP | lysine transporter |
| * | NC_000913 | 298,960 | 0 | A | C | 39.1% | 72.6 / 17.6 | 47 | Y659D (TAT→GAT) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 1,222,233 | 0 | G | A | 38.6% | 61.3 / 15.3 | 44 | pseudogene (60/75 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| * | NC_000913 | 2,343,821 | 0 | C | A | 38.5% | 58.6 / 10.9 | 39 | A117S (GCT→TCT) | yfaL | adhesin |
| * | NC_000913 | 3,206,435 | 0 | C | T | 38.2% | 74.9 / 26.2 | 55 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,393,679 | 0 | A | T | 38.1% | 87.9 / 23.3 | 63 | S860R (AGT→AGA) | yhdP | DUF3971‑AsmA2 domains protein |
| * | NC_000913 | 2,481,804 | 0 | G | A | 38.0% | 98.6 / 34.9 | 71 | P125S (CCA→TCA) | emrY | putative multidrug efflux system |
| * | NC_000913 | 1,222,596 | 0 | G | A | 37.9% | 83.2 / 32.1 | 66 | F13F (TTC→TTT) | ymgD | uncharacterized protein |