mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 620 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,376,505 | 0 | A | C | 45.7% | 84.8 / 36.8 | 70 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 3,585,086 | 0 | A | C | 43.4% | 120.8 / 20.3 | 76 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltranspeptidase |
| * | NC_000913 | 1,397,830 | 0 | T | C | 43.1% | 91.3 / 17.4 | 65 | I265V (ATT→GTT) | uspE | stress‑induced protein |
| * | NC_000913 | 5,159 | 0 | G | A | 42.3% | 83.0 / 50.3 | 78 | intergenic (+139/‑75) | thrC/yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| * | NC_000913 | 1,415,395 | 0 | G | A | 41.7% | 99.7 / 45.7 | 85 | R664R (CGC→CGT) | recE | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease |
| * | NC_000913 | 2,228,275 | 0 | T | C | 41.6% | 93.7 / 11.8 | 78 | pseudogene (335/1287 nt) | mdtQ | pseudogene; putative channel/filament proteins |
| * | NC_000913 | 357,890 | 0 | C | A | 41.5% | 32.4 / 22.9 | 41 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 599,576 | 0 | T | G | 40.7% | 125.8 / 31.8 | 83 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 4,287,719 | 0 | T | A | 40.3% | 89.9 / 46.3 | 67 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| * | NC_000913 | 343,444 | 0 | A | G | 40.0% | 99.8 / 16.9 | 70 | G187G (GGA→GGG) | yahK | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing |
| * | NC_000913 | 1,684,712 | 0 | A | C | 40.0% | 101.0 / 12.4 | 62 | T152P (ACC→CCC) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| * | NC_000913 | 2,483,268 | 0 | T | A | 40.0% | 94.4 / 36.7 | 71 | L24F (TTA→TTT) | emrK | multidrug resistance efflux pump membrane fusion protein |
| * | NC_000913 | 826,954 | 0 | A | T | 39.7% | 104.8 / 29.1 | 69 | I100N (ATT→AAT) | ybhS | putative ABC transporter permease |
| * | NC_000913 | 1,684,736 | 0 | A | C | 39.7% | 90.6 / 12.7 | 59 | T160P (ACC→CCC) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| * | NC_000913 | 3,443,277 | 0 | A | C | 39.2% | 80.9 / 20.0 | 51 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 12,486 | 0 | G | A | 38.9% | 112.5 / 28.6 | 72 | Q108Q (CAG→CAA) | dnaK | chaperone Hsp70, with co‑chaperone DnaJ |
| * | NC_000913 | 2,984,441 | 0 | A | C | 38.8% | 115.6 / 22.7 | 67 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 38.8% | 62.2 / 20.8 | 50 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 4,604,350 | 0 | C | T | 38.8% | 61.0 / 20.6 | 50 | S64F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 2,151,689 | 0 | G | T | 38.7% | 49.8 / 20.3 | 63 | intergenic (+43/+22) | yegJ/yegK | uncharacterized protein/ser/thr phosphatase‑related protein |