mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 312 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 62.5% | ‑3.9 / 36.3 | 32 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 4,378,802 | 0 | A | C | 56.7% | 28.5 / 46.9 | 30 | V48G (GTA→GGA) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| * | NC_000913 | 357,880 | 0 | T | C | 55.6% | 19.6 / 47.3 | 36 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,306,136 | 0 | A | C | 52.2% | 32.1 / 37.3 | 23 | G575G (GGT→GGG) | deaD | ATP‑dependent RNA helicase |
| * | NC_000913 | 29,496 | 0 | T | A | 51.0% | 40.0 / 80.7 | 49 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 827,507 | 0 | T | G | 50.0% | 54.9 / 13.9 | 46 | D492A (GAC→GCC) | ybhF | putative ABC transporter ATPase |
| * | NC_000913 | 4,538,109 | 0 | A | C | 50.0% | 67.0 / 23.3 | 59 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 599,576 | 0 | T | G | 48.0% | 59.6 / 23.5 | 50 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 646,747 | 0 | T | G | 47.1% | 77.3 / 13.8 | 52 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 869,107 | 0 | A | G | 46.5% | 42.3 / 13.5 | 43 | I530V (ATT→GTT) | gsiA | glutathione ABC transporter ATPase |
| * | NC_000913 | 1,376,505 | 0 | A | C | 46.5% | 62.0 / 18.2 | 43 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 29,486 | 0 | C | A | 46.3% | 51.4 / 24.1 | 41 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 1,535,785 | 0 | A | G | 46.2% | 40.7 / 15.9 | 39 | F25S (TTC→TCC) | yddE | PhzC‑PhzF family protein |
| * | NC_000913 | 2,001,911 | 0 | G | A | 45.8% | 51.7 / 37.5 | 59 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 646,765 | 0 | G | T | 45.2% | 45.9 / 27.5 | 43 | Q249K (CAA→AAA) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 2,001,918 | 0 | A | C | 44.8% | 90.9 / 14.5 | 58 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 2,481,804 | 0 | G | A | 44.4% | 61.2 / 26.9 | 54 | P125S (CCA→TCA) | emrY | putative multidrug efflux system |
| * | NC_000913 | 501,575 | 0 | A | C | 44.3% | 102.1 / 18.6 | 61 | V555G (GTG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 3,350,853 | 0 | A | C | 43.9% | 93.5 / 14.0 | 57 | S725A (TCA→GCA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 2,678,043 | 0 | C | T | 43.6% | 39.6 / 21.1 | 40 | E107K (GAA→AAA) | yphE | putative sugar ABC transporter ATPase |