mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 283 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 213,341 | 0 | A | G | 50.0% | 39.5 / 11.7 | 38 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 589,934 | 0 | T | G | 50.0% | 37.6 / 22.2 | 38 | T341P (ACC→CCC) | nfrA | bacteriophage N4 receptor, outer membrane subunit |
| * | NC_000913 | 357,890 | 0 | C | A | 48.4% | 18.4 / 23.1 | 31 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 503,834 | 0 | T | C | 48.1% | 52.6 / 24.7 | 54 | D288G (GAT→GGT) | fsr | putative fosmidomycin efflux system protein |
| * | NC_000913 | 345,328 | 0 | C | A | 46.8% | 91.2 / 42.8 | 62 | intergenic (+337/‑76) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| * | NC_000913 | 589,930 | 0 | A | G | 46.2% | 47.0 / 15.1 | 39 | L342P (CTC→CCC) | nfrA | bacteriophage N4 receptor, outer membrane subunit |
| * | NC_000913 | 3,350,844 | 0 | A | C | 45.6% | 86.8 / 18.1 | 57 | L728V (TTA→GTA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 2,363,421 | 0 | T | C | 44.2% | 50.7 / 10.9 | 43 | G71G (GGA→GGG) | yfaY | inactive PncC family protein |
| * | NC_000913 | 357,875 | 0 | A | T | 44.1% | 41.9 / 14.6 | 34 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 4,112,586 | 0 | C | G | 44.1% | 76.5 / 24.7 | 59 | A91G (GCG→GGG) | yiiR | DUF805 family putative inner membrane protein |
| * | NC_000913 | 357,880 | 0 | T | C | 43.8% | 36.1 / 11.1 | 32 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 4,161,142 | 0 | C | A | 43.6% | 73.8 / 32.6 | 55 | Q7K (CAA→AAA) | fabR | transcriptional repressor of fabA and fabB |
| * | NC_000913 | 29,496 | 0 | T | A | 43.3% | 86.4 / 45.3 | 67 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 2,481,804 | 0 | G | A | 43.2% | 60.6 / 18.1 | 44 | P125S (CCA→TCA) | emrY | putative multidrug efflux system |
| * | NC_000913 | 1,764,774 | 0 | G | A | 42.9% | 41.8 / 10.2 | 35 | intergenic (‑388/+160) | sufA/ydiH | Fe‑S cluster assembly protein/uncharacterized protein |
| * | NC_000913 | 4,538,109 | 0 | A | C | 42.9% | 115.7 / 20.8 | 72 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 3,743,657 | 0 | A | C | 42.5% | 65.2 / 12.0 | 40 | T309P (ACC→CCC) | yiaK | 2,3‑diketo‑L‑gulonate reductase, NADH‑dependent |
| * | NC_000913 | 1,222,596 | 0 | G | A | 42.2% | 43.4 / 27.9 | 45 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| * | NC_000913 | 1,376,505 | 0 | A | C | 42.2% | 69.5 / 14.5 | 45 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 2,921,173 | 0 | T | C | 42.1% | 50.1 / 11.2 | 38 | I310V (ATT→GTT) | gudP | putative D‑glucarate transporter |