mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 371 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,361,337 | 0 | A | C | 61.4% | 30.4 / 51.6 | 45 | G26G (GGT→GGG) | rhmD | L‑rhamnonate dehydratase |
| * | NC_000913 | 2,984,441 | 0 | A | C | 56.7% | 55.9 / 91.2 | 60 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 4,258,974 | 0 | T | G | 52.2% | 49.4 / 69.6 | 47 | G411G (GGT→GGG) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| * | NC_000913 | 827,507 | 0 | T | G | 51.6% | 83.6 / 103.0 | 63 | D492A (GAC→GCC) | ybhF | putative ABC transporter ATPase |
| * | NC_000913 | 1,356,201 | 0 | T | G | 51.4% | 40.2 / 57.5 | 36 | T304P (ACC→CCC) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| * | NC_000913 | 357,880 | 0 | T | C | 50.0% | 34.6 / 19.3 | 38 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,511,769 | 0 | A | C | 48.0% | 76.5 / 10.8 | 50 | V313G (GTG→GGG) | mntH | manganese/divalent cation transporter |
| * | NC_000913 | 2,511,772 | 0 | A | C | 48.0% | 66.1 / 20.5 | 50 | V312G (GTG→GGG) | mntH | manganese/divalent cation transporter |
| * | NC_000913 | 599,576 | 0 | T | G | 47.8% | 96.0 / 24.7 | 68 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 345,328 | 0 | C | A | 47.6% | 81.1 / 40.5 | 63 | intergenic (+337/‑76) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| * | NC_000913 | 2,984,447 | 0 | G | C | 46.8% | 72.9 / 23.4 | 62 | G382G (GGC→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 366,526 | 0 | T | G | 46.7% | 52.2 / 26.8 | 45 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 925,900 | 0 | A | G | 45.2% | 87.7 / 16.1 | 62 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 535,901 | 0 | T | G | 45.0% | 124.0 / 13.6 | 80 | G64G (GGT→GGG) | hyi | hydroxypyruvate isomerase |
| * | NC_000913 | 357,873 | 0 | C | T | 44.7% | 36.8 / 18.8 | 38 | S273N (AGC→AAC) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,845,823 | 0 | G | T | 44.3% | 93.5 / 27.3 | 61 | R449S (CGC→AGC) | uhpT | hexose phosphate transporter |
| * | NC_000913 | 650,464 | 0 | A | T | 43.6% | 76.6 / 25.8 | 56 | R9R (CGT→CGA) | citE | citrate lyase, citryl‑ACP lyase (beta) subunit |
| * | NC_000913 | 357,890 | 0 | C | A | 43.6% | 51.9 / 19.0 | 40 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 753,125 | 0 | T | A | 43.3% | 79.0 / 34.3 | 60 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 32,653 | 0 | T | C | 43.1% | 68.5 / 15.9 | 51 | S613P (TCC→CCC) | carB | carbamoyl‑phosphate synthase large subunit |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 925901 = | 65 (1.020) | 6 (0.100) +CCCCCCCCC |
4/280 | 9.5 | 10.9% | noncoding (71/88 nt) | serW | tRNA‑Ser |
| ? | NC_000913 | = 1097391 | 39 (0.610) | intergenic (+562/+174) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||