mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 372 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 599,576 | 0 | T | G | 55.8% | 34.3 / 66.8 | 43 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 4,332,791 | 0 | A | C | 48.8% | 50.4 / 17.8 | 41 | V161G (GTG→GGG) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| * | NC_000913 | 1,376,505 | 0 | A | C | 48.1% | 80.1 / 11.4 | 52 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 2,578,143 | 0 | A | C | 47.5% | 77.1 / 27.8 | 61 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| * | NC_000913 | 3,333,757 | 0 | T | G | 47.4% | 80.3 / 15.6 | 57 | G16G (GGT→GGG) | ispB | octaprenyl diphosphate synthase |
| * | NC_000913 | 3,001,164 | 0 | A | C | 46.3% | 53.2 / 19.2 | 41 | T274P (ACC→CCC) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |
| * | NC_000913 | 1,222,233 | 0 | G | A | 45.0% | 64.1 / 37.5 | 60 | pseudogene (60/75 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| * | NC_000913 | 2,903,692 | 0 | C | A | 43.8% | 93.8 / 52.6 | 64 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 4,536,197 | 0 | A | T | 43.6% | 35.4 / 41.0 | 39 | intergenic (+166/+417) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| * | NC_000913 | 3,813,272 | 0 | C | T | 43.4% | 37.9 / 31.0 | 54 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| * | NC_000913 | 1,776,263 | 0 | T | G | 43.1% | 96.6 / 15.7 | 58 | V226G (GTG→GGG) | ydiF | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
| * | NC_000913 | 3,270,455 | 0 | G | T | 42.6% | 65.1 / 25.2 | 54 | intergenic (+853/+170) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| * | NC_000913 | 4,111,747 | 0 | G | T | 42.5% | 63.5 / 18.5 | 40 | N156K (AAC→AAA) | yiiQ | DUF1454 family putative periplasmic protein |
| * | NC_000913 | 718,669 | 0 | C | T | 42.3% | 72.7 / 22.8 | 52 | E598K (GAA→AAA) | speF | ornithine decarboxylase isozyme, inducible |
| * | NC_000913 | 775,709 | 0 | T | C | 42.3% | 62.7 / 19.9 | 52 | I186T (ATC→ACC) | tolQ | membrane spanning protein in TolA‑TolQ‑TolR complex |
| * | NC_000913 | 366,526 | 0 | T | G | 42.2% | 94.4 / 30.8 | 64 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 4,622,250 | 0 | A | G | 42.1% | 78.6 / 18.3 | 57 | E161G (GAG→GGG) | yjjJ | putative protein kinase |
| * | NC_000913 | 1,036,927 | 0 | T | A | 42.0% | 74.3 / 22.3 | 50 | L60Q (CTA→CAA) | hyaF | hydrogenase‑1 protein nickel incorporation factor |
| * | NC_000913 | 4,486,580 | 0 | A | G | 41.4% | 94.8 / 11.3 | 58 | G121G (GGA→GGG) | lptF | lipopolysaccharide export ABC permease |
| * | NC_000913 | 3,705,661 | 0 | T | C | 41.3% | 92.4 / 13.6 | 63 | I44V (ATC→GTC) | dppB | dipeptide/heme ABC transporter permease |