mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 999 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,875 | 0 | A | T | 49.2% | 54.1 / 50.7 | 67 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,880 | 0 | T | C | 49.2% | 59.0 / 26.9 | 63 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,890 | 0 | C | A | 49.2% | 49.5 / 39.4 | 64 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 339,865 | 0 | A | G | 48.0% | ‑5.5 / 67.5 | 50 | intergenic (+122/‑300) | yahG/yahI | DUF1116 family protein/carbamate kinase‑like protein |
| * | NC_000913 | 213,341 | 0 | A | G | 47.5% | 122.4 / 45.9 | 101 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 599,576 | 0 | T | G | 45.8% | 179.6 / 53.1 | 118 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 599,579 | 0 | T | G | 44.9% | 218.3 / 11.5 | 118 | V289G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 3,665,702 | 0 | C | A | 43.6% | 161.3 / 62.0 | 110 | A37S (GCG→TCG) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| * | NC_000913 | 689,514 | 0 | A | C | 42.9% | 115.7 / 15.1 | 71 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| * | NC_000913 | 3,133,302 | 0 | T | G | 42.9% | 164.1 / 11.9 | 85 | H219P (CAC→CCC) | yghS | putative ATP‑binding protein |
| * | NC_000913 | 1,376,505 | 0 | A | C | 42.7% | 188.8 / 32.9 | 104 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 3,492,834 | 0 | T | G | 42.3% | 188.4 / 34.9 | 112 | G89G (GGT→GGG) | tsgA | putative transporter |
| * | NC_000913 | 2,326,450 | 0 | T | G | 41.8% | 194.3 / 23.2 | 105 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 987,494 | 0 | T | G | 41.6% | 215.7 / 25.3 | 114 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 993,913 | 0 | G | C | 41.6% | 161.6 / 37.5 | 89 | G44G (GGC→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 2,984,441 | 0 | A | C | 41.4% | 161.7 / 34.3 | 87 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 41.1% | 127.6 / 75.9 | 112 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,423,297 | 0 | G | C | 40.8% | 188.0 / 46.9 | 98 | intergenic (+103/+126) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,378,802 | 0 | A | C | 40.8% | 198.7 / 25.6 | 98 | V48G (GTA→GGA) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| * | NC_000913 | 3,105,499 | 0 | A | C | 40.7% | 259.0 / 12.9 | 118 | Y356S (TAC→TCC) | mltC | membrane‑bound lytic murein transglycosylase C |