mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 146 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,042,604 | 0 | A | C | 56.7% | 20.5 / 46.8 | 30 | V182G (GTG→GGG) | yqfA | hemolysin III family HylIII inner membrane protein |
| * | NC_000913 | 907,602 | 0 | A | C | 55.9% | 35.4 / 50.2 | 34 | G227G (GGT→GGG) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 523,335 | 0 | T | G | 53.3% | 23.9 / 38.4 | 30 | G25G (GGT→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 987,503 | 0 | G | A | 51.6% | 15.7 / 40.4 | 32 | intergenic (‑521/+82) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 599,576 | 0 | T | G | 51.2% | 44.0 / 72.0 | 43 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 3,947,850 | 0 | C | T | 50.0% | 33.0 / 33.3 | 50 | E40K (GAA→AAA) | hdfR | flhDC operon transcriptional repressor |
| * | NC_000913 | 16,736 | 0 | T | C | 48.5% | 18.2 / 12.8 | 33 | intergenic (+179/+15) | insL1/hokC | IS186 transposase/toxic membrane protein, small |
| * | NC_000913 | 298,960 | 0 | A | C | 48.4% | 24.5 / 13.3 | 31 | Y659D (TAT→GAT) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 3,477,840 | 0 | G | C | 48.4% | 18.6 / 17.6 | 31 | T67T (ACG→ACC) | slyX | phi X174 lysis protein |
| * | NC_000913 | 2,624,508 | 0 | A | T | 47.1% | 34.9 / 19.7 | 34 | N489Y (AAC→TAC) | ppk | polyphosphate kinase, component of RNA degradosome |
| * | NC_000913 | 1,842,914 | 0 | A | G | 46.9% | 23.5 / 10.4 | 32 | M182V (ATG→GTG) | gdhA | glutamate dehydrogenase, NADP‑specific |
| * | NC_000913 | 3,757,668 | 0 | C | T | 46.7% | 7.2 / 17.7 | 30 | A54T (GCA→ACA) | yiaY | L‑threonine dehydrogenase |
| * | NC_000913 | 599,579 | 0 | T | G | 46.5% | 60.9 / 11.6 | 43 | V289G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 3,042,597 | 0 | G | A | 44.8% | 30.0 / 11.3 | 29 | F184F (TTC→TTT) | yqfA | hemolysin III family HylIII inner membrane protein |
| * | NC_000913 | 3,443,277 | 0 | A | C | 44.7% | 54.0 / 13.1 | 38 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 4,238,049 | 0 | A | G | 44.7% | 46.6 / 10.7 | 38 | E139G (GAA→GGA) | yjbH | DUF940 family extracellular polysaccharide protein |
| * | NC_000913 | 3,850,001 | 0 | C | A | 44.4% | 30.5 / 10.2 | 27 | G46C (GGT→TGT) | uhpB | sensory histidine kinase in two‑component regulatory sytem with UhpA |
| * | NC_000913 | 3,850,007 | 0 | G | A | 44.4% | 19.2 / 15.4 | 27 | P44S (CCG→TCG) | uhpB | sensory histidine kinase in two‑component regulatory sytem with UhpA |
| * | NC_000913 | 1,159,837 | 0 | A | G | 44.1% | 39.9 / 10.2 | 34 | I572T (ATC→ACC) | fhuE | ferric‑rhodotorulic acid outer membrane transporter |
| * | NC_000913 | 2,265,617 | 0 | C | A | 43.8% | 51.7 / 13.6 | 34 | F56L (TTC→TTA) | yeiP | elongation factor P‑like protein |