mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 380 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,880 | 0 | T | C | 55.1% | 29.5 / 67.0 | 50 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,921,177 | 0 | A | C | 50.0% | 88.1 / 10.2 | 58 | G308G (GGT→GGG) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 4,604,344 | 0 | C | T | 50.0% | 39.6 / 29.3 | 54 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 3,206,435 | 0 | C | T | 47.3% | 39.6 / 33.1 | 55 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 2,326,450 | 0 | T | G | 46.4% | 95.9 / 12.8 | 56 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 646,747 | 0 | T | G | 45.5% | 99.4 / 10.3 | 66 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 357,873 | 0 | C | T | 45.3% | 34.7 / 30.1 | 54 | S273N (AGC→AAC) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 4,538,109 | 0 | A | C | 44.8% | 113.4 / 21.0 | 68 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 357,890 | 0 | C | A | 44.7% | 23.8 / 25.2 | 47 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,921,173 | 0 | T | C | 44.6% | 67.2 / 23.9 | 56 | I310V (ATT→GTT) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 504,640 | 0 | C | T | 43.8% | 59.7 / 32.7 | 65 | K19K (AAG→AAA) | fsr | putative fosmidomycin efflux system protein |
| * | NC_000913 | 3,423,287 | 0 | G | C | 43.8% | 86.2 / 35.5 | 64 | intergenic (+93/+136) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 73,581 | 0 | A | C | 43.1% | 92.6 / 17.7 | 58 | V314G (GTA→GGA) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease |
| * | NC_000913 | 907,602 | 0 | A | C | 42.9% | 101.0 / 11.2 | 63 | G227G (GGT→GGG) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 1,376,505 | 0 | A | C | 42.9% | 86.7 / 19.6 | 56 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 357,875 | 0 | A | T | 42.6% | 52.1 / 30.7 | 54 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,578,143 | 0 | A | C | 42.4% | 127.0 / 12.7 | 66 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| * | NC_000913 | 144,184 | 0 | T | G | 42.1% | 92.0 / 15.8 | 57 | G161G (GGT→GGG) | yadH | putative ABC transporter permease |
| * | NC_000913 | 354,288 | 0 | T | G | 41.7% | 115.8 / 11.3 | 61 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 3,508,657 | 0 | A | G | 41.7% | 120.5 / 14.4 | 73 | F386S (TTC→TCC) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |