mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 111,512 | 0 | A | G | 27.6% | 917.1 / inf | 486 | S194S (TCA→TCG) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 111,516 | 0 | C | A | 25.0% | 1103.0 / inf | 464 | Q196K (CAA→AAA) | USA300HOU_RS00520 | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 693 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 514606 | NA (NA) | 98 (0.320) | 28/166 | 22.4 | NA | intergenic (+2674/‑4089) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 514610 | NA (NA) | intergenic (+2678/‑4085) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 513404 = | NA (NA) | 75 (0.240) | 23/168 | 25.4 | NA | intergenic (+1472/‑5291) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 513421 = | NA (NA) | intergenic (+1489/‑5274) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 512969 = | NA (NA) | 68 (0.230) | 20/162 | 26.4 | NA | intergenic (+1037/‑5726) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 512991 = | NA (NA) | intergenic (+1059/‑5704) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | CP000731 | 21026 = | NA (NA) | 87 (0.120) | 21/168 | 26.6 | 27.6% | coding (45/675 nt) | USA300HOU_pUSA300HOUMR0027 | IS431mec transposase |
| ? | USA300TCH1516_ALE | = 76274 | 245 (0.740) | coding (60/246 nt) | USA300HOU_RS00140 | hypothetical protein | |||||
| * | ? | CP000731 | 21026 = | NA (NA) | 87 (0.120) | 21/168 | 26.6 | 23.9% | coding (45/675 nt) | USA300HOU_pUSA300HOUMR0027 | IS431mec transposase |
| ? | USA300TCH1516_ALE | 36492 = | 297 (0.900) | coding (60/675 nt) | USA300HOU_RS00140 | hypothetical protein | |||||
| * | ? | CP000731 | 21017 = | NA (NA) | 65 (0.090) | 20/168 | 27.2 | 20.3% | coding (54/675 nt) | USA300HOU_pUSA300HOUMR0027 | IS431mec transposase |
| ? | USA300TCH1516_ALE | = 76265 | 273 (0.820) | coding (51/246 nt) | USA300HOU_RS00140 | hypothetical protein | |||||
| * | ? | CP000731 | = 12551 | NA (NA) | 82 (0.110) | 20/170 | 27.5 | 26.2% | coding (45/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
| ? | USA300TCH1516_ALE | = 76274 | 245 (0.740) | coding (60/246 nt) | USA300HOU_RS00140 | hypothetical protein | |||||
| * | ? | CP000731 | = 12551 | NA (NA) | 82 (0.110) | 20/170 | 27.5 | 22.6% | coding (45/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
| ? | USA300TCH1516_ALE | 36492 = | 297 (0.900) | coding (60/675 nt) | USA300HOU_RS00140 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 76265 | 273 (0.820) | 66 (0.210) | 19/168 | 27.8 | 20.9% | coding (51/246 nt) | USA300HOU_RS00140 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 76268 | 245 (0.790) | coding (54/246 nt) | USA300HOU_RS00140 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 36492 = | 297 (0.900) | 65 (0.210) | 19/168 | 27.8 | 19.8% | coding (60/675 nt) | USA300HOU_RS00140 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 76259 | 251 (0.810) | coding (45/246 nt) | USA300HOU_RS00140 | hypothetical protein | |||||