mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 106 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 3216668 = | 36 (0.860) | 5 (0.130) | 5/270 | 4.9 | 11.0% | noncoding (68/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 4457193 | 47 (1.180) | noncoding (27/84 nt) | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3070003 = | NA (NA) | 5 (0.130) | 5/270 | 4.9 | 12.2% | noncoding (1/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | 3216675 = | 36 (0.900) | noncoding (75/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 707934 | NA (NA) | 5 (0.130) | 5/270 | 4.9 | 12.2% | noncoding (165/165 nt) | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | 3216675 = | 36 (0.900) | noncoding (75/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 411164 | 57 (1.360) | 5 (0.130) | 5/270 | 4.9 | 10.0% | noncoding (87/191 nt) | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 3216675 = | 36 (0.900) | noncoding (75/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2630906 = | 60 (1.430) | 4 (0.100) | 4/260 | 5.2 | 6.6% | intergenic (+41/+52) | yfgI/guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| ? | NC_000913_3_hsa_tpiA | 2630934 = | 59 (1.540) | intergenic (+69/+24) | yfgI/guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4542664 = | 27 (0.650) | 4 (0.100) | 4/266 | 5.3 | 15.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | 4542978 = | 19 (0.480) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2581761 | NA (NA) | 5 (0.130) | 4/268 | 5.3 | NA | coding (1017/1044 nt) | ypfG | DUF1176 family protein |
| ? | NC_000913_3_hsa_tpiA | = 2581765 | NA (NA) | coding (1013/1044 nt) | ypfG | DUF1176 family protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2041152 = | NA (NA) | 4 (0.100) | 4/268 | 5.3 | NA | noncoding (1/34 nt) | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 2041182 = | NA (NA) | noncoding (31/34 nt) | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1228752 | 51 (1.220) | 4 (0.100) | 4/264 | 5.3 | 8.2% | intergenic (+14/‑63) | ycgM/ycgN | putative isomerase/hydrolase/UPF0153 family cysteine cluster protein |
| ? | NC_000913_3_hsa_tpiA | = 1228759 | 42 (1.080) | intergenic (+21/‑56) | ycgM/ycgN | putative isomerase/hydrolase/UPF0153 family cysteine cluster protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 79980 | 33 (0.790) | 4 (0.100) | 4/268 | 5.3 | 11.9% | coding (885/1401 nt) | leuC | 3‑isopropylmalate dehydratase large subunit |
| ? | NC_000913_3_hsa_tpiA | = 79994 | 28 (0.710) | coding (871/1401 nt) | leuC | 3‑isopropylmalate dehydratase large subunit | |||||