mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 39.2% | 27.5 / 43.2 | 51 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 95 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 3895233 | 34 (0.930) | 6 (0.180) | 6/262 | 3.7 | 16.4% | intergenic (+15/+39) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter |
| ? | NC_000913_3_pae_tpiA | = 3895244 | 30 (0.900) | intergenic (+26/+28) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter | |||||
| * | ? | NC_000913_3_pae_tpiA | 228016 = | NA (NA) | 5 (0.140) | 5/272 | 4.2 | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 2810870 = | 34 (0.930) | 5 (0.140) +C |
5/284 | 4.4 | 13.2% | coding (101/531 nt) | mprA | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| ? | NC_000913_3_pae_tpiA | 2810877 = | 32 (0.880) | coding (108/531 nt) | mprA | transcriptional repressor of microcin B17 synthesis and multidrug efflux | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4609514 | 33 (0.910) | 4 (0.120) | 4/270 | 4.6 | 11.7% | coding (185/1590 nt) | prfC | peptide chain release factor RF‑3 |
| ? | NC_000913_3_pae_tpiA | = 4609530 | 29 (0.840) | coding (201/1590 nt) | prfC | peptide chain release factor RF‑3 | |||||
| * | ? | NC_000913_3_pae_tpiA | 3986604 = | 48 (1.320) | 4 (0.120) | 4/264 | 4.6 | 8.3% | noncoding (173/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | NC_000913_3_pae_tpiA | 3986634 = | 44 (1.310) | noncoding (203/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3250260 | 34 (0.930) | 4 (0.120) | 4/270 | 4.6 | 11.2% | coding (184/300 nt) | yqjK | uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 3250270 | 31 (0.900) | coding (194/300 nt) | yqjK | uncharacterized protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 2814163 = | 36 (0.990) | 4 (0.120) | 4/264 | 4.6 | 11.1% | intergenic (+9/+55) | emrB/luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| ? | NC_000913_3_pae_tpiA | 2814187 = | 31 (0.920) | intergenic (+33/+31) | emrB/luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase | |||||
| * | ? | NC_000913_3_pae_tpiA | 1689809 = | 38 (1.040) | 4 (0.120) | 4/270 | 4.6 | 9.7% | intergenic (+58/‑43) | manA/ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| ? | NC_000913_3_pae_tpiA | 1689830 = | 39 (1.140) | intergenic (+79/‑22) | manA/ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 318648 | 38 (1.040) | 4 (0.120) | 4/264 | 4.6 | 10.4% | intergenic (‑81/+28) | rclB/rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| ? | NC_000913_3_pae_tpiA | = 318654 | 34 (1.010) | intergenic (‑87/+22) | rclB/rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4400048 | 39 (1.070) | 4 (0.120) | 4/272 | 4.7 | 9.3% | coding (881/951 nt) | miaA | delta(2)‑isopentenylpyrophosphate tRNA‑adenosine transferase |
| ? | NC_000913_3_pae_tpiA | = 4400054 | 41 (1.180) | coding (887/951 nt) | miaA | delta(2)‑isopentenylpyrophosphate tRNA‑adenosine transferase | |||||