Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A17 F172 I1 R1	29	81.4	1744314	96.7%	1686751	139.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP000730	638,614	G→T	T14K (ACA→AAA)	thiD ←	phosphomethylpyrimidine kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	638,614	0	G	T	98.7%	254.1 / ‑3.1	76	T14K (ACA→AAA)	thiD	phosphomethylpyrimidine kinase
Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (35/40); total (36/40)
Fisher's exact test for biased strand distribution p-value = 4.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.93e-01

CATCCATTGGTAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTGTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGATTGTTGAAATG  >  CP000730/638477‑638751

cATCCATTGGTAATGGTGTAACATCGTGTGACCATGTATCTTTCTCCATGGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGATTTCAAATCTGCTTGCATACCTGCGCCAGCACTTttgt                                                                                                                                         >  2:521445/1‑141 (MQ=255)

 aTCCATTGGTAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTc                                                                                                                                        <  2:420988/141‑1 (MQ=255)

     aTTGGTAATGGTGCAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGaa                                                                                                                                    <  1:532992/141‑1 (MQ=255)

       tGGTAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAAcc                                                                                                                                  <  1:84048/141‑1 (MQ=255)

       tGGTAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAATTCACGGGACCGTGCCCGACGTATCTAATTCTTGGAACTTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAAcc                                                                                                                                  <  1:302173/141‑1 (MQ=255)

         gTAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCgg                                                                                                                                <  2:22330/141‑1 (MQ=255)

          tAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGc                                                                                                                               >  2:160440/1‑141 (MQ=255)

            aTGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCaa                                                                                                                             >  1:157100/1‑141 (MQ=255)

                tgtAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGt                                                                                                                         <  2:183542/141‑1 (MQ=255)

                 gtAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGtt                                                                                                                        >  1:373514/1‑141 (MQ=255)

                  tAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑a                                                                                                                      <  1:76780/141‑1 (MQ=255)

                   aaCATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑aa                                                                                                                     <  2:800194/141‑1 (MQ=255)

                    aCATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑aaa                                                                                                                    <  2:240224/141‑1 (MQ=255)

                       tCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAAct                                                                                                                 <  1:388039/141‑1 (MQ=255)

                         gtgtGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAActtt                                                                                                               >  2:844951/1‑141 (MQ=255)

                         gtgtGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAActtt                                                                                                               >  2:260768/1‑141 (MQ=255)

                          tgtgACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAActttc                                                                                                              <  2:367557/141‑1 (MQ=255)

                           gtgACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAActttct                                                                                                             >  1:856999/1‑141 (MQ=255)

                            tgACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAActttctt                                                                                                            >  2:362606/1‑141 (MQ=255)

                               ctaTGTATCTTTATCCATAGTAACGATGGCCGTTAAAGCGACCATGCCATACGTATCTATTTCTTGGAACTTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTaa                                                                                                         <  2:402990/139‑1 (MQ=255)

                                   gTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCACAACCGGCAATTGTT‑AAAACTTTCTTTAAAGcc                                                                                                     >  1:595238/1‑141 (MQ=255)

                                     aTCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGCACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCATAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCAt                                                                                                   >  2:711927/1‑141 (MQ=255)

                                     aTCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCAt                                                                                                   >  2:804317/1‑141 (MQ=255)

                                     aTCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCAt                                                                                                   <  2:263181/141‑1 (MQ=255)

                                        tttATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGa                                                                                                >  2:157794/1‑141 (MQ=255)

                                        tttATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGa                                                                                                <  1:863898/141‑1 (MQ=255)

                                              cATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCa                                                                                          >  1:344488/1‑141 (MQ=255)

                                                      cGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACa                                                                                  >  2:109061/1‑141 (MQ=255)

                                                        aTGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACata                                                                                >  1:129248/1‑141 (MQ=255)

                                                         tGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGGTTTCAAATCTGCTTGCATACCTGAGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACataa                                                                               >  2:296230/1‑141 (MQ=255)

                                                            cAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACataataa                                                                            >  2:27324/1‑141 (MQ=255)

                                                            cAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACataataa                                                                            >  1:832602/1‑141 (MQ=255)

                                                               ttAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAatat                                                                         <  2:597160/141‑1 (MQ=255)

                                                               ttAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAatat                                                                         >  2:261044/1‑141 (MQ=255)

                                                                tAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATAtt                                                                        <  2:583312/141‑1 (MQ=255)

                                                                tAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATAtt                                                                        <  2:583342/141‑1 (MQ=255)

                                                                   aGCGACCATGCCATACGTATCCAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTa                                                                     >  2:160881/1‑141 (MQ=255)

                                                                     cGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTAtt                                                                   <  2:703008/141‑1 (MQ=255)

                                                                      gACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATtc                                                                  <  1:504672/141‑1 (MQ=255)

                                                                      gACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACGTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATtc                                                                  >  2:733215/1‑141 (MQ=255)

                                                                        ccATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAGCCGGCAATTGTG‑AAAACTTTCTGTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATtcat                                                                >  1:736420/1‑141 (MQ=255)

                                                                        ccATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTaaaaca                                                                >  1:91101/1‑136 (MQ=255)

                                                                        ccATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATtcat                                                                >  1:11065/1‑141 (MQ=255)

                                                                        ccATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAAGTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATtcat                                                                >  1:86333/1‑141 (MQ=255)

                                                                            gCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCatcata                                                            <  2:4753/141‑1 (MQ=255)

                                                                              cATACGTATCTAATTCTTGGGACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTATAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCatcatatc                                                          <  2:544948/141‑1 (MQ=255)

                                                                              cATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCatcatatc                                                          <  1:109061/141‑1 (MQ=255)

                                                                              cATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCatcatatc                                                          <  2:12021/141‑1 (MQ=255)

                                                                                     aTCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTTAAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCAttttt                                                    <  2:75572/141‑1 (MQ=255)

                                                                                      tCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTaa                                                  >  2:491782/1‑141 (MQ=255)

                                                                                       cTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAAc                                                 >  1:290595/1‑141 (MQ=255)

                                                                                       cTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAAc                                                 <  2:679943/141‑1 (MQ=255)

                                                                                       cTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAAc                                                 <  2:196704/141‑1 (MQ=255)

                                                                                               tGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGa                                         >  2:370836/1‑141 (MQ=255)

                                                                                               tGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGa                                         <  1:469116/141‑1 (MQ=255)

                                                                                               tGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGa                                         <  1:469149/141‑1 (MQ=255)

                                                                                                 gAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGaaa                                       <  1:14342/141‑1 (MQ=255)

                                                                                                 gAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGaaa                                       <  2:212122/141‑1 (MQ=255)

                                                                                                   aCGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGaaaaa                                     >  2:670800/1‑141 (MQ=255)

                                                                                                               cTGCTTGCATACCTGCTCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTc                         <  1:355985/141‑1 (MQ=255)

                                                                                                                 gCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCaa                       >  1:619242/1‑141 (MQ=255)

                                                                                                                 gCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCaa                       <  2:680942/141‑1 (MQ=255)

                                                                                                                    tGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAatat                    <  1:416308/141‑1 (MQ=255)

                                                                                                                    tGCATACCTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAatat                    <  1:868243/141‑1 (MQ=255)

                                                                                                                          ccTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTtgatg              <  2:659531/141‑1 (MQ=255)

                                                                                                                           cTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTtgatga             <  1:453676/141‑1 (MQ=255)

                                                                                                                           cTGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTtgatga             >  2:625313/1‑141 (MQ=255)

                                                                                                                            tacgcCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTgatgat            >  1:196561/3‑141 (MQ=255)

                                                                                                                            tGCGCCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTgatgat            >  2:448278/1‑141 (MQ=255)

                                                                                                                              cgcCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGAttg          >  2:249265/1‑141 (MQ=255)

                                                                                                                              cgcCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGAttg          >  1:289998/1‑141 (MQ=255)

                                                                                                                              cgcCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGAttg          <  2:518804/141‑1 (MQ=255)

                                                                                                                              cgcCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGAttg          <  1:358508/141‑1 (MQ=255)

                                                                                                                               gcCAGCACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGAttgt         <  1:491686/141‑1 (MQ=255)

                                                                                                                                    cACTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGATTGTTGaaa    >  2:290413/1‑141 (MQ=255)

                                                                                                                                    cACTTGTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGATTGTTGaaa    >  1:744246/1‑141 (MQ=255)

                                                                                                                                      cTTTTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGATTGTTGAAATg  <  1:739034/141‑1 (MQ=255)

CATCCATTGGTAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTGTGTCAGAACCGGCAATTGTT‑AAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGATTGTTGAAATG  >  CP000730/638477‑638751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A