Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A78 F1 I1 R1
|
16 |
49.7 |
3184232 |
95.8% |
3050494 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
2,045,633 |
IS1 (–) +9 bp |
coding (652‑660/1086 nt) |
rfbB ← |
dTDP‑glucose 4,6 dehydratase, NAD(P)‑binding |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 1974039 | NA (NA) | 54 (1.090) |
38/150 |
0.3 |
88.8% |
noncoding (768/768 nt) |
IS1 |
repeat region |
| ? | REL606 |
= 2045641 |
6 (0.140) | coding (652/1086 nt) |
rfbB |
dTDP‑glucose 4,6 dehydratase, NAD(P)‑binding |
| * |
? |
REL606 |
= 2035093 | NA (NA) | 77 (1.560) |
50/150 |
0.0 |
91.8% |
noncoding (1/768 nt) |
IS1 |
repeat region |
| ? | REL606 |
2045633 = |
6 (0.140) | coding (660/1086 nt) |
rfbB |
dTDP‑glucose 4,6 dehydratase, NAD(P)‑binding |
TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1973965‑1974039
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGAGGATCATGCTCGAGC < REL606/2045641‑2045568
TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 1:890798/76‑1
TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 1:192437/76‑1
TCGGTGGAGCTGCATGACAAAGACATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG > 2:1456017/1‑76
CGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGATCATAAAACACTATCAATAAGTTGGAGTCATTACCGG < 2:1333663/76‑1
CGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGG > 1:960781/1‑76
GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGT < 1:1325070/76‑1
GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTA < 2:785882/76‑1
TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAA > 2:1351114/1‑76
TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAA > 1:422553/1‑76
GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAG < 2:133520/76‑1
GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTA < 1:1323557/76‑1
GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTA > 1:488280/1‑76
GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTA > 1:488295/1‑76
ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTAT > 1:832157/1‑76
AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTT < 2:112142/76‑1
AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTT > 2:1328387/1‑76
AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTA > 1:1003526/1‑76
ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCA < 1:1143352/76‑1
GCATTATCTGAACATAAAACACTATCACTAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGA > 2:1405361/1‑76
CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAG > 1:1482194/1‑76
ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGA > 2:425645/1‑76
TTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGAT > 1:566592/1‑76
TTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGAT < 2:1360097/76‑1
TTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGAT > 1:292360/1‑76
TATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATC < 1:431621/76‑1
ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCA < 1:583225/76‑1
ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCA < 1:608668/76‑1
TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAG > 1:1428991/1‑76
CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGA < 1:828198/76‑1
CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGA > 1:1354986/1‑76
CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGA > 1:303624/1‑76
AACATAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCC > 2:542654/1‑76
TAAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGA > 2:1429328/1‑76
AAAACACTATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGAC > 1:585574/1‑76
ATCAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTA > 1:755576/1‑76
CAATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATG > 2:1511836/1‑76
ATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTA > 2:790842/1‑76
ATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTA < 2:934260/76‑1
ATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTA > 1:1155373/1‑76
ATAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTACGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTA > 2:790833/1‑76
TAAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAG > 2:1378127/1‑76
AAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGA > 1:471890/1‑76
AAGTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGA < 2:639006/76‑1
GTTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGAGG < 1:662331/76‑1
TTGGAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGAGGA > 1:1490114/1‑76
GAGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGAGGATCA < 1:837370/76‑1
AGTCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGAGGATCAT < 1:1065045/76‑1
TCATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGAGGATCATGC > 2:326110/1‑76
ATTACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGAGGATCATGCTC < 1:1330789/76‑1
ACCGGTAAGGCATTACCTTTTAAGGGCAAAGGATGTAAGATCCGCGGCTGGTTGTATGTAGAGGATCATGCTCGAG < 1:722886/76‑1
ACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGAGGATCATGCTCGAG < 1:714927/76‑1
ACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGAGGATCATGCTCGAG < 2:225395/76‑1
ACCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGAGCCGCGACTGGTTGTATGTAGAGGATCATGCTCGAG < 2:1449248/76‑1
CCGGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGAGGATCATGCTCGAGC > 2:1118783/1‑76
TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1973965‑1974039
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAAGGCATTACCTATTTATGGCAAAGGAGATCAGATCCGCGACTGGTTGTATGTAGAGGATCATGCTCGAGC < REL606/2045641‑2045568
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
