Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A65 F1 I1 R1
|
19 |
67.5 |
4307580 |
97.2% |
4186967 |
74.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,912,149 |
Δ15 bp |
coding (28‑42/99 nt) |
ilvL → |
ilvG operon leader peptide |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3912148 | 4 (0.060) | 48 (0.820) |
37/130 |
0.6 |
92.8% |
coding (27/99 nt) |
ilvL |
ilvG operon leader peptide |
| ? | REL606 |
3912164 = |
4 (0.070) | coding (43/99 nt) |
ilvL |
ilvG operon leader peptide |
CCTATGGTAACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3912070‑3912148
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgattagcGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACG > REL606/3912164‑3912236
CCTATGGTAACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGAT < 1:741216/75‑1
CCTATGGTAACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGAT < 2:833799/75‑1
TATGGTAACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTA < 1:1770158/75‑1
GGTAACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTA > 2:1286224/1‑72
GGTAACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTA < 1:1286224/72‑1
AACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGG > 1:876686/1‑75
AACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGG > 1:704135/1‑75
ACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGT < 1:1545334/75‑1
CTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGT < 2:755450/75‑1
TAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGAT > 1:783811/1‑75
AGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATT > 1:1762302/1‑75
ATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTA < 2:1962288/75‑1
TTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTAT > 1:713036/1‑75
TCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATC > 2:314945/1‑75
CTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCC > 1:633936/1‑75
TTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCA > 2:153918/1‑75
TCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCAC > 1:780380/1‑75
GAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCG < 2:784508/75‑1
AAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCG < 2:348632/75‑1
AGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGG > 2:194207/1‑75
AGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGG > 1:578404/1‑75
ATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGG > 1:1265686/1‑75
GCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCT > 1:1053147/1‑75
GCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCT > 2:391047/1‑75
GCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCT > 2:1008166/1‑75
GCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCT > 1:1217850/1‑75
AGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCA > 1:1266257/1‑75
AGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCA < 2:2146489/75‑1
AAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGA > 2:881615/1‑75
AAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGA < 2:1545725/75‑1
AAAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGA > 2:192965/1‑75
AAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAG > 1:1082739/1‑75
AAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAG < 1:1495024/75‑1
AAATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAG > 2:1982919/1‑75
AATGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGG > 1:2066189/1‑75
TGACAGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAA < 1:120079/75‑1
AGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGC > 2:638053/1‑75
AGCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGC < 2:41768/75‑1
GCCCTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCT > 2:1905045/1‑75
CTTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAG < 2:1957136/75‑1
TTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGA < 2:876686/75‑1
TTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGA > 2:1562777/1‑75
TTCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGA > 2:1498011/1‑75
TCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAG < 1:1601992/75‑1
TCTACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAG > 1:1130781/1‑75
TACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGAT > 1:643295/1‑75
ACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATC < 2:525850/75‑1
ACGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATC < 2:1179556/75‑1
CGAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCA > 1:787939/1‑75
GAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAA > 2:955554/1‑75
GAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAA > 2:1431375/1‑75
GAGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAA > 2:1640424/1‑75
AGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAG > 1:1593766/1‑75
TGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCC < 2:1379064/75‑1
GATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCT > 2:961584/1‑75
ATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTT < 2:780380/75‑1
TTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTA > 2:755111/1‑75
GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACG > 2:629886/1‑75
GCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACG > 2:313675/1‑75
CCTATGGTAACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3912070‑3912148
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgattagcGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACG > REL606/3912164‑3912236
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
