Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A25 F1 I1 R1 14 46.3 3075166 96.7% 2973685 76.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC REL606 3,912,149 Δ15 bp coding (28‑42/99 nt) ilvL → ilvG operon leader peptide

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3912149 3912163 15 46 [0] [0] 46 ilvL ilvG operon leader peptide

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 39121480 (0.000)43 (1.010) 33/132 0.3 100% coding (27/99 nt) ilvL ilvG operon leader peptide
?REL606 3912164 = 0 (0.000)coding (43/99 nt) ilvL ilvG operon leader peptide

GATK/CNVnator alignment

N/A