Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F999 I0 R1
|
74 |
90.2 |
6704215 |
98.2% |
6583539 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,720,597 |
Δ1 bp |
coding (4/153 nt) |
hokA ← |
small toxic polypeptide |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,720,596 | 0 | G | . | 100.0%
| 680.2
/ NA
| 134 | coding (5/153 nt) | hokA | small toxic polypeptide |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (70/64); total (70/64) |
Only 100 of 149 total aligned reads displayed.
TAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCA > NC_000913/3720547‑3720641
|
tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg > 1:3738066/1‑50 (MQ=255)
tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg > 1:3624361/1‑50 (MQ=255)
tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg < 1:3444358/50‑1 (MQ=255)
aaaaGCGTGAAACAACTCACTATTAAAGAAAGTAATCTATATTTCTGCg > 1:6387726/1‑49 (MQ=255)
aaaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg > 1:5535811/1‑49 (MQ=255)
aaaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg > 1:5159196/1‑49 (MQ=255)
aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgca < 1:5585570/50‑3 (MQ=255)
aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgca > 1:3971153/1‑48 (MQ=255)
aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgca > 1:2092383/1‑48 (MQ=255)
aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgc < 1:4839077/49‑2 (MQ=255)
aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgc < 1:3816937/49‑2 (MQ=255)
gAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAg > 1:36003/1‑50 (MQ=255)
gAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAg > 1:2456413/1‑50 (MQ=255)
aaaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAg < 1:1086550/49‑1 (MQ=255)
aaaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGc < 1:2751622/50‑1 (MQ=255)
aaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc < 1:3850974/50‑1 (MQ=255)
aaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc > 1:2651867/1‑50 (MQ=255)
aaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc < 1:2256047/50‑1 (MQ=255)
aCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcct < 1:5667622/50‑1 (MQ=255)
aCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcct < 1:4977902/50‑1 (MQ=255)
aCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcct > 1:6028223/1‑50 (MQ=255)
aCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcct > 1:2351676/1‑50 (MQ=255)
cAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctc > 1:1791147/1‑50 (MQ=255)
cAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctc > 1:1658451/1‑50 (MQ=255)
aaTCACTATTACAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcct < 1:635670/50‑1 (MQ=255)
aaTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcct < 1:1626723/50‑1 (MQ=255)
aaTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcct < 1:567661/50‑1 (MQ=255)
aaTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcct < 1:1743929/50‑1 (MQ=255)
tCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtgt > 1:3023430/1‑50 (MQ=255)
cACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtgtg > 1:6489745/1‑50 (MQ=255)
cACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtgtg > 1:6534890/1‑50 (MQ=255)
cACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtgtg > 1:324925/1‑50 (MQ=255)
cACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtgtg > 1:2651738/1‑50 (MQ=255)
cACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtgtg > 1:3218047/1‑50 (MQ=255)
aCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTgtgt > 1:5884020/1‑50 (MQ=255)
aCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTgtgt > 1:3060144/1‑50 (MQ=255)
cTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt < 1:3076392/50‑1 (MQ=255)
tATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt > 1:6151337/1‑49 (MQ=255)
aTTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGa > 1:2274207/1‑50 (MQ=255)
aTTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGa > 1:139191/1‑50 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTg < 1:4837890/48‑1 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAt > 1:312996/1‑50 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAt < 1:2419566/50‑1 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAt < 1:5434030/50‑1 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAt < 1:116289/50‑1 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTc > 1:4063413/1‑50 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTc < 1:6290380/50‑1 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTc < 1:6400518/50‑1 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTc < 1:2768977/50‑1 (MQ=255)
agaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTcc < 1:5342391/50‑1 (MQ=255)
agaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTc > 1:2545673/1‑49 (MQ=255)
gaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCa < 1:951241/50‑1 (MQ=255)
gaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCa < 1:5346644/50‑1 (MQ=255)
gaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCa < 1:3312324/50‑1 (MQ=255)
aaagTAATCTATATTTCTGC‑GCATTTCCAGCCTCCTGTGTTGATTTCCaa > 1:2931995/1‑50 (MQ=255)
aaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCaa > 1:6585345/1‑50 (MQ=255)
aaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCaa > 1:3588549/1‑50 (MQ=255)
aaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCaa < 1:1419766/50‑1 (MQ=255)
aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc < 1:3794316/50‑1 (MQ=255)
aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc < 1:6643897/50‑1 (MQ=255)
aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc > 1:1590921/1‑50 (MQ=255)
aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc < 1:4235326/50‑1 (MQ=255)
aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc < 1:4007509/50‑1 (MQ=255)
agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACg < 1:6681035/50‑1 (MQ=255)
tAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg > 1:1253/1‑50 (MQ=255)
tAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg > 1:3225554/1‑50 (MQ=255)
tAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg > 1:3503149/1‑50 (MQ=255)
tAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg < 1:1636478/50‑1 (MQ=255)
aaTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg > 1:4186836/1‑49 (MQ=255)
aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGt < 1:3843896/49‑1 (MQ=255)
aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGt < 1:325767/49‑1 (MQ=255)
aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa < 1:4434911/50‑1 (MQ=255)
tCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa > 1:6273192/1‑49 (MQ=255)
tCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa > 1:4041112/1‑49 (MQ=255)
tCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa > 1:4627168/1‑49 (MQ=255)
tCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa > 1:2079082/1‑49 (MQ=255)
cTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt > 1:5880497/1‑49 (MQ=255)
tataTTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa > 1:982142‑M1/1‑48 (MQ=255)
tataTTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa > 1:1716171‑M1/1‑48 (MQ=255)
tataTTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa > 1:2049302‑M1/1‑48 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt < 1:3678026/46‑1 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact < 1:5637427‑M1/50‑5 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact > 1:4226961‑M1/1‑46 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact > 1:6559401‑M1/1‑46 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact > 1:6439066‑M1/1‑46 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa < 1:5674466‑M1/48‑3 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa < 1:1753399‑M1/48‑3 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa < 1:1187692‑M1/47‑2 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa < 1:3063182‑M1/47‑2 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa < 1:1671632‑M1/47‑2 (MQ=255)
atTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt > 1:1684970‑M1/1‑45 (MQ=255)
atTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt > 1:1727055‑M1/1‑45 (MQ=255)
atTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt > 1:1030437‑M1/1‑45 (MQ=255)
tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:149195‑M1/1‑44 (MQ=255)
tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:1464721‑M1/1‑44 (MQ=255)
ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:2154498‑M1/1‑43 (MQ=255)
ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:1887892‑M1/1‑43 (MQ=255)
ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:4138462‑M1/1‑43 (MQ=255)
ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:54314‑M1/1‑43 (MQ=255)
tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga > 1:3350524‑M1/1‑42 (MQ=255)
|
TAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCA > NC_000913/3720547‑3720641
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
