Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F999 I0 R1
|
75 |
109.1 |
8321009 |
96.7% |
8046415 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,720,597 |
Δ1 bp |
coding (4/153 nt) |
hokA ← |
small toxic polypeptide |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,720,596 | 0 | G | . | 100.0%
| 842.1
/ NA
| 170 | coding (5/153 nt) | hokA | small toxic polypeptide |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (88/82); total (88/82) |
Only 100 of 180 total aligned reads displayed.
TAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCA > NC_000913/3720547‑3720641
|
tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg < 1:5627635/50‑1 (MQ=255)
tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg > 1:7583799/1‑50 (MQ=255)
tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg > 1:6800367/1‑50 (MQ=255)
aaaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg > 1:1103008/1‑49 (MQ=255)
aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgca > 1:3419454/1‑48 (MQ=255)
aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgca > 1:1912324/1‑48 (MQ=255)
aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgca > 1:7805478/1‑48 (MQ=255)
cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc > 1:7248023/1‑50 (MQ=255)
cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc > 1:5275510/1‑50 (MQ=255)
cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc < 1:4200934/50‑1 (MQ=255)
cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc > 1:7728747/1‑50 (MQ=255)
cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc < 1:4457362/50‑1 (MQ=255)
gTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTccc < 1:5858266/50‑1 (MQ=255)
gTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc > 1:2276129/1‑49 (MQ=39)
gTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc > 1:6401108/1‑49 (MQ=39)
tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc > 1:3657126/1‑48 (MQ=255)
tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc > 1:7710972/1‑48 (MQ=255)
tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa < 1:7942925/50‑1 (MQ=255)
tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa < 1:3586394/50‑1 (MQ=255)
tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa < 1:2864130/50‑1 (MQ=255)
tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa < 1:5805103/50‑1 (MQ=255)
tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa < 1:5192238/50‑1 (MQ=255)
tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa < 1:4378785/50‑1 (MQ=255)
gAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAg > 1:5948997/1‑50 (MQ=255)
aaaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGc > 1:2007804/1‑50 (MQ=255)
aaCAAATCGCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc < 1:249611/50‑1 (MQ=255)
aaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc < 1:7549433/50‑1 (MQ=255)
aaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc > 1:3532693/1‑50 (MQ=255)
aaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc > 1:7659346/1‑50 (MQ=255)
aCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcct < 1:2879909/50‑1 (MQ=255)
aCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcct > 1:5338019/1‑50 (MQ=255)
cAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctc > 1:4728187/1‑50 (MQ=255)
aaaTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcc > 1:1463500/1‑50 (MQ=255)
aaaTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcc > 1:8149210/1‑50 (MQ=255)
aaTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcct < 1:6730466/50‑1 (MQ=255)
tCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtgt < 1:3970324/50‑1 (MQ=255)
aCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTgtgt > 1:4710600/1‑50 (MQ=255)
aCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTgtgt > 1:2951862/1‑50 (MQ=255)
cTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt > 1:2687251/1‑50 (MQ=255)
cTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt < 1:2124389/50‑1 (MQ=255)
tATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt > 1:288757/1‑49 (MQ=255)
tATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt > 1:7780288/1‑49 (MQ=255)
tATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt > 1:152306/1‑49 (MQ=255)
aTTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGa > 1:8244977/1‑50 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTg < 1:7213039/48‑1 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAt > 1:4829683/1‑50 (MQ=255)
aaagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAtt < 1:2214025/49‑1 (MQ=255)
aaagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAtt < 1:2114545/49‑1 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAttt < 1:3525677/49‑1 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAttt < 1:5095383/49‑1 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAttt < 1:4805616/49‑1 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAttt < 1:837143/49‑1 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAttt < 1:6492035/49‑1 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTc < 1:1026280/50‑1 (MQ=255)
gaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTcc > 1:4072734/1‑49 (MQ=255)
gaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTcc > 1:3337065/1‑49 (MQ=255)
gaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCa < 1:4397285/50‑1 (MQ=255)
gaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCa < 1:3087303/50‑1 (MQ=255)
aaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCaa > 1:5236296/1‑50 (MQ=255)
aaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCaa < 1:5877821/50‑1 (MQ=255)
aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc < 1:7162755/50‑1 (MQ=255)
aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc < 1:3130072/50‑1 (MQ=255)
aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc < 1:6245659/50‑1 (MQ=255)
aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc > 1:301249/1‑50 (MQ=255)
aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc < 1:809097/50‑1 (MQ=255)
agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc > 1:1058109/1‑49 (MQ=255)
agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc > 1:1184941/1‑49 (MQ=255)
agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACg < 1:4939227/50‑1 (MQ=255)
agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACg < 1:701070/50‑1 (MQ=255)
gTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc > 1:845508/1‑48 (MQ=255)
gTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc > 1:4628218/1‑48 (MQ=255)
tAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg < 1:2243485/50‑1 (MQ=255)
aaTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg > 1:6192417/1‑49 (MQ=255)
aaTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg > 1:1467783/1‑49 (MQ=255)
aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa > 1:4667705/1‑50 (MQ=255)
aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa > 1:7816794/1‑50 (MQ=255)
aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa > 1:4533565/1‑50 (MQ=255)
aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa > 1:3928176/1‑50 (MQ=255)
aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa < 1:2843480/50‑1 (MQ=255)
tCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa > 1:7286151/1‑49 (MQ=255)
tCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa > 1:2225150/1‑49 (MQ=255)
cTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt > 1:5593918/1‑49 (MQ=255)
atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac > 1:7881539‑M1/1‑47 (MQ=255)
atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac > 1:2777589‑M1/1‑47 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact > 1:7179842‑M1/1‑46 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact > 1:2266312‑M1/1‑46 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac < 1:7650532‑M1/49‑4 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa < 1:2633174‑M1/48‑3 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa < 1:5695138‑M1/47‑2 (MQ=255)
atTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt > 1:7837203‑M1/1‑45 (MQ=255)
tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:2392885‑M1/1‑44 (MQ=255)
tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:5427513‑M1/1‑44 (MQ=255)
tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt < 1:1844204‑M1/49‑6 (MQ=255)
tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt < 1:50126‑M1/49‑6 (MQ=255)
ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:2700757‑M1/1‑43 (MQ=255)
ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:6867340‑M1/1‑43 (MQ=255)
tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga > 1:6316424‑M1/1‑42 (MQ=255)
tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga > 1:7227223‑M1/1‑42 (MQ=255)
tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttg < 1:3136127‑M1/49‑8 (MQ=255)
tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttg < 1:6893107‑M1/49‑8 (MQ=255)
|
TAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCA > NC_000913/3720547‑3720641
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
