Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F999 I0 R1
|
76 |
100.0 |
7495425 |
97.1% |
7278057 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,720,597 |
Δ1 bp |
coding (4/153 nt) |
hokA ← |
small toxic polypeptide |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,720,596 | 0 | G | . | 100.0%
| 329.3
/ NA
| 66 | coding (5/153 nt) | hokA | small toxic polypeptide |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (31/35); total (31/35) |
TAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCA > NC_000913/3720547‑3720641
|
tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg < 1:6044317/50‑1 (MQ=255)
tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg > 1:423887/1‑50 (MQ=255)
tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg < 1:7279023/50‑1 (MQ=255)
aaaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg > 1:4998809/1‑49 (MQ=255)
aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgca > 1:4094599/1‑48 (MQ=255)
aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgca > 1:1845141/1‑48 (MQ=255)
aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgc < 1:7180926/49‑2 (MQ=255)
cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc < 1:4379851/50‑1 (MQ=255)
cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc > 1:3616108/1‑50 (MQ=255)
gTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTccc < 1:1596567/50‑1 (MQ=255)
gTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc > 1:4897640/1‑49 (MQ=39)
tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc > 1:4068697/1‑48 (MQ=255)
tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa < 1:6823045/50‑1 (MQ=255)
tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa < 1:3095793/50‑1 (MQ=255)
aaaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAg < 1:3683833/49‑1 (MQ=255)
aaaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGc > 1:783086/1‑50 (MQ=255)
aaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc > 1:6341556/1‑50 (MQ=255)
aaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc < 1:1037895/50‑1 (MQ=255)
aCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcct < 1:3282489/50‑1 (MQ=255)
cAAATCGCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctc > 1:3059599/1‑50 (MQ=255)
cAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctc < 1:3501592/50‑1 (MQ=255)
cAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctc < 1:2878396/50‑1 (MQ=255)
aaaTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcc > 1:2024588/1‑50 (MQ=255)
aaTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcct < 1:5008724/50‑1 (MQ=255)
aTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtg > 1:3600814/1‑50 (MQ=255)
aTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtg > 1:3666296/1‑50 (MQ=255)
cACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtgtg > 1:2834870/1‑50 (MQ=255)
aCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtgtg < 1:1342765/49‑1 (MQ=255)
aCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTgtgt < 1:3284021/50‑1 (MQ=255)
aCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTgtgt < 1:3752668/50‑1 (MQ=255)
cTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt < 1:2429387/50‑1 (MQ=255)
cTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt > 1:5791543/1‑50 (MQ=255)
cTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt < 1:2302652/50‑1 (MQ=255)
cTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt > 1:2627716/1‑50 (MQ=255)
cTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt < 1:7223640/50‑1 (MQ=255)
cTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt < 1:359612/50‑1 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTg < 1:4949773/48‑1 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAt > 1:3226569/1‑50 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAt > 1:587289/1‑50 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAt < 1:6828357/50‑1 (MQ=255)
ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAt > 1:3951011/1‑50 (MQ=255)
tAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAtt > 1:6300072/1‑50 (MQ=255)
aaagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAttt > 1:3287787/1‑50 (MQ=255)
aaagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAtt < 1:1468639/49‑1 (MQ=255)
aaagaaagTAATCTATATTTCTGC‑GCATTCACAGCCTCCTGTGTTGAtt < 1:6891754/49‑1 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTc > 1:7234225/1‑50 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTc < 1:4412891/50‑1 (MQ=255)
aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTc < 1:6138170/50‑1 (MQ=255)
agaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTcc < 1:5958189/50‑1 (MQ=255)
aaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCaa > 1:4831024/1‑50 (MQ=255)
agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc > 1:6234432/1‑49 (MQ=255)
agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc > 1:997832/1‑49 (MQ=255)
agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACg < 1:5657118/50‑1 (MQ=255)
agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACg < 1:2219490/50‑1 (MQ=255)
agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACg < 1:6574174/50‑1 (MQ=255)
agTAATCTATATTTCTGC‑GCAGTCCCAGCCTCCTGTGTTGATTTCCAACg < 1:5710715/50‑1 (MQ=255)
tAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg < 1:3327542/50‑1 (MQ=255)
tAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg < 1:3723324/50‑1 (MQ=255)
aaTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg > 1:3522042/1‑49 (MQ=255)
tCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa > 1:4871469/1‑49 (MQ=255)
tataTTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa > 1:5390924‑M1/1‑48 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt < 1:5141427/46‑1 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact > 1:127983‑M1/1‑46 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact < 1:2100711‑M1/50‑5 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac < 1:6325180‑M1/49‑4 (MQ=255)
tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac < 1:1940447‑M1/49‑4 (MQ=255)
atTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt > 1:7406155‑M1/1‑45 (MQ=255)
ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:4588673‑M1/1‑43 (MQ=255)
ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:6767880‑M1/1‑43 (MQ=255)
ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt > 1:6692748‑M1/1‑43 (MQ=255)
tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga > 1:6311609‑M1/1‑42 (MQ=255)
tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga > 1:5420523‑M1/1‑42 (MQ=255)
tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttg < 1:4079106‑M1/49‑8 (MQ=255)
|
TAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCA > NC_000913/3720547‑3720641
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
