Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F999 I0 R1 74 90.2 6704215 98.2% 6583539 49.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,400,289 Δ7 bp coding (2‑8/309 nt) hfq → RNA‑binding protein Hfq

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4400289 4400295 7 128 [0] [0] 128 hfq RNA‑binding protein Hfq

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 44002880 (0.000)117 (1.380) 68/94 0.0 100% coding (1/309 nt) hfq RNA‑binding protein Hfq
?NC_000913 4400296 = 0 (0.000)coding (9/309 nt) hfq RNA‑binding protein Hfq

GATK/CNVnator alignment

N/A