Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I0 R1
|
72 |
72.2 |
7896259 |
97.8% |
7722541 |
35.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_000913 |
4,400,289 |
Δ7 bp |
coding (2‑8/309 nt) |
hfq → |
RNA‑binding protein Hfq |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4400288 | 1 (0.010) | 92 (1.350) |
45/64 |
0.0 |
99.0% |
coding (1/309 nt) |
hfq |
RNA‑binding protein Hfq |
| ? | NC_000913 |
4400296 = |
1 (0.010) | coding (9/309 nt) |
hfq |
RNA‑binding protein Hfq |
CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400254‑4400288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGC > NC_000913/4400296‑4400328
CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA > 1:6052577/1‑35
CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA > 1:4131585/1‑35
AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAG > 1:6065720/1‑35
AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAG > 1:5798420/1‑35
AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAG > 1:7678519/1‑35
AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:611600/1‑35
AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:3082850/1‑35
AGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG > 1:4455807/1‑35
AGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG > 1:5740188/1‑35
GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:4791862/1‑35
TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:1665598/1‑35
TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC < 1:76488/35‑1
TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC < 1:7620168/35‑1
TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:4915839/1‑35
TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:635290/1‑35
ACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCA < 1:7728317/35‑1
CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA < 1:5150322/35‑1
CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:4069787/1‑35
CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:4185037/1‑35
CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA < 1:4230038/35‑1
AAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT < 1:1989553/35‑1
AAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT < 1:6621646/35‑1
AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC < 1:2933936/35‑1
AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC < 1:4188361/35‑1
AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC < 1:1160428/35‑1
AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC > 1:6411358/1‑35
AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC > 1:6135693/1‑35
ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT < 1:833061/35‑1
ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:1644922/1‑35
ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:362454/1‑35
ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:4852386/1‑35
TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT < 1:7598440/35‑1
TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:4714727/1‑35
TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:1430207/1‑35
TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:160655/1‑35
TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT < 1:4110701/35‑1
TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:2436574/1‑35
AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT < 1:1648324/35‑1
AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT > 1:7412165/1‑35
AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT > 1:5652314/1‑35
AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT < 1:7066159/35‑1
AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:7121086/1‑35
AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:947290/1‑35
AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:4657907/1‑35
AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA < 1:2562614/35‑1
AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:1189419/1‑35
AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:1867279/1‑35
AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:2291352/1‑35
GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC < 1:855785/35‑1
GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:687092/1‑35
GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC < 1:2221835/35‑1
CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACA > 1:74275/1‑35
ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA < 1:7197360/35‑1
ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA < 1:4543617/35‑1
ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA > 1:2760355/1‑35
ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA > 1:2391912/1‑35
ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA < 1:5179570/35‑1
TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG < 1:213325/35‑1
TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG > 1:1389536/1‑35
TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG > 1:6475101/1‑35
TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG > 1:2656376/1‑35
ATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGA < 1:7646504/35‑1
ATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGA > 1:4530341/1‑35
TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGAT > 1:6487169/1‑35
TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGAT > 1:7107150/1‑35
TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGAT > 1:7299442/1‑35
AAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC > 1:6293014/1‑35
AAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 1:7116214/35‑1
AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC > 1:325349/1‑35
AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC > 1:2220790/1‑35
AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC > 1:3280517/1‑35
GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:2501470/35‑1
GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG > 1:4815081/1‑35
GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:3790408/35‑1
GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:1884727/35‑1
AAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT > 1:3328611/1‑35
AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC > 1:6287766/1‑35
AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC > 1:2008692/1‑35
AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC > 1:3256300/1‑35
AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCC < 1:4909262/35‑1
GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG < 1:7611576/35‑1
GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG < 1:1034502/35‑1
GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG > 1:6601228/1‑35
GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG < 1:2820633/35‑1
GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG > 1:4932146/1‑35
GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG < 1:729954/35‑1
AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA > 1:7103950/1‑35
AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA > 1:5729134/1‑35
AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA < 1:5411070/35‑1
GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:5411649/1‑35
GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA < 1:4017509/35‑1
GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:4468562/1‑35
GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:2725852/1‑35
GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:7187557/1‑35
AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGC > 1:738267/1‑35
AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGC > 1:2705057/1‑35
CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400254‑4400288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGC > NC_000913/4400296‑4400328
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
