Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F999 I0 R1
|
76 |
100.0 |
7495425 |
97.1% |
7278057 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_000913 |
4,400,289 |
Δ7 bp |
coding (2‑8/309 nt) |
hfq → |
RNA‑binding protein Hfq |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4400288 | 11 (0.110) | 80 (0.850) |
54/94 |
0.0 |
87.2% |
coding (1/309 nt) |
hfq |
RNA‑binding protein Hfq |
| ? | NC_000913 |
4400296 = |
13 (0.140) | coding (9/309 nt) |
hfq |
RNA‑binding protein Hfq |
CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400239‑4400288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344
CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGA < 1:5071498/49‑1
CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGA < 1:6387460/49‑1
AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA < 1:5271894/49‑1
GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:6065855/1‑50
GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:5485348/1‑50
GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG < 1:4106433/50‑1
GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:3894082/1‑50
AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG > 1:647419/1‑50
AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG > 1:5596918/1‑50
AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG < 1:3178100/50‑1
AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG < 1:3133370/50‑1
TCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:2539659/1‑49
CGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:1661197/1‑49
CGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:5044110/1‑49
CGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:693520/1‑49
GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:4151747/1‑50
GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:5163679/1‑50
GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCA < 1:1582294/49‑1
AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT < 1:6219049/50‑1
AAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC > 1:5655684/1‑50
AGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:3509135/1‑50
GGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:2461934/1‑50
GGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT < 1:1234539/50‑1
TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:1418457/1‑50
TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:6156782/1‑50
CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC < 1:1459620/49‑1
CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC < 1:1496438/49‑1
AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA < 1:4440795/50‑1
AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:283464/1‑48
AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG < 1:4030400/50‑1
TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 1:5360799/50‑1
TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC > 1:2630653/1‑50
TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 1:3831483/50‑1
ACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC > 1:7184975/1‑50
CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG > 1:523427/1‑50
CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:3661307/50‑1
CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG > 1:1678466/1‑50
CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG > 1:1425963/1‑50
CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:203537/50‑1
AAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGT > 1:6844184/1‑50
AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT > 1:2969569/1‑50
AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT > 1:4383328/1‑50
TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCC > 1:17998/1‑50
TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCC < 1:5372116/50‑1
GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA < 1:2154077/50‑1
CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:59426/1‑50
CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:1592919/1‑50
CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA < 1:3240952/50‑1
CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA < 1:7151049/50‑1
ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAAC > 1:1082019/1‑50
ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAAC < 1:2842213/50‑1
ATATAAGGAAAAGAGAGAAGGGGCAATCTATACAAGATCCGTTCCTGAAC > 1:664954/1‑50
TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:5775466/1‑50
ATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:2117345/1‑49
TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA < 1:1844039/50‑1
TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA > 1:1714025/1‑50
AAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAC > 1:2132258/1‑50
AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT > 1:6056416/1‑50
GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTG < 1:5511484/50‑1
GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTG > 1:2947087/1‑50
GAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGC > 1:1132163/1‑50
AAAAGAGAGAAGGTGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCG > 1:5408293/1‑50
AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGT < 1:382168/50‑1
AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC > 1:1403914/1‑50
AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC < 1:3828140/50‑1
AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC < 1:3345661/50‑1
AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > 1:6320311/1‑50
AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > 1:218814/1‑50
AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG < 1:276465/50‑1
GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG < 1:6925011/50‑1
AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG < 1:2102677/50‑1
AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG > 1:2084858/1‑49
AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG > 1:7046952/1‑49
GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG > 1:3818340/1‑49
AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA > 1:5401732/1‑50
AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA > 1:1454414/1‑50
GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:5663417/50‑1
GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:2198268/50‑1
GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:5491173/50‑1
GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC > 1:6364990/1‑50
GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:3679519/50‑1
GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC > 1:2026681/1‑50
GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC > 1:1824892/1‑50
AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG > 1:6863702/1‑50
AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > 1:2046612/1‑50
AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT < 1:6799628/50‑1
AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT < 1:2813739/50‑1
CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400239‑4400288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
