Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F999 I0 R1
|
92 |
59.4 |
4455785 |
96.3% |
4290920 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,816,579 |
G→A |
intergenic (‑30/‑97) |
rph ← / → yicC |
truncated RNase PH/UPF0701 family protein YicC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,816,579 | 0 | G | A | 100.0%
| 202.5
/ NA
| 50 | intergenic (‑30/‑97) | rph/yicC | truncated RNase PH/UPF0701 family protein YicC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (28/22); total (28/22) |
CGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGG > NC_000913/3816533‑3816625
|
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTg < 1:564905/50‑1 (MQ=255)
ggCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgc < 1:1231898/50‑1 (MQ=255)
ggCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgc < 1:3027980/50‑1 (MQ=255)
gCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg < 1:2636109/50‑1 (MQ=255)
gCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg > 1:3271009/1‑50 (MQ=255)
gCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg < 1:4101450/50‑1 (MQ=255)
ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg > 1:1942195/1‑49 (MQ=255)
ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg > 1:1092496/1‑49 (MQ=255)
ctgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCa > 1:2167115/1‑50 (MQ=255)
ctgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCa > 1:987438/1‑50 (MQ=255)
ctgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCa > 1:2253683/1‑50 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 1:577494/49‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt < 1:2935287/48‑1 (MQ=255)
tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta > 1:783288/1‑49 (MQ=255)
gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata < 1:2440546/49‑1 (MQ=255)
aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg < 1:1754463/50‑1 (MQ=255)
cGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg > 1:1960929/1‑49 (MQ=255)
cGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg > 1:1301700/1‑49 (MQ=255)
gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa > 1:3971076/1‑50 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc > 1:645416/1‑50 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc > 1:912858/1‑50 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc < 1:134367/50‑1 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc < 1:3436644/50‑1 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc < 1:1453900/50‑1 (MQ=255)
atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt > 1:547155/1‑50 (MQ=255)
atTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc > 1:1269135/1‑50 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc < 1:1997642/49‑1 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc < 1:498596/49‑1 (MQ=255)
gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcg < 1:3699986/49‑1 (MQ=255)
gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcg < 1:855013/49‑1 (MQ=255)
aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc > 1:2170080/1‑50 (MQ=255)
aTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggcgg > 1:1375931/1‑50 (MQ=255)
aTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggcgg > 1:1750512/1‑50 (MQ=255)
tcCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTa > 1:3751626/1‑50 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTa < 1:1691404/48‑1 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAtt > 1:2138045/1‑50 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTGCCGGCGGTTa < 1:3702332/48‑1 (MQ=255)
gCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTcc < 1:3612799/50‑1 (MQ=255)
gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTAt < 1:2630271/49‑1 (MQ=255)
gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATc > 1:3175612/1‑50 (MQ=255)
aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc > 1:2866229/1‑50 (MQ=255)
aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATc < 1:405791/49‑1 (MQ=255)
aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt < 1:4339432/50‑1 (MQ=255)
aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 1:1845698/1‑50 (MQ=255)
aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 1:1635858/1‑50 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:4328089/1‑49 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:1886738/1‑49 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:88285/1‑49 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:890524/1‑49 (MQ=255)
gtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAgg > 1:855113/1‑50 (MQ=255)
|
CGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGG > NC_000913/3816533‑3816625
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
