Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A19 F999 I0 R1
|
91 |
166.1 |
11695708 |
96.8% |
11321445 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,816,579 |
G→A |
intergenic (‑30/‑97) |
rph ← / → yicC |
truncated RNase PH/UPF0701 family protein YicC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,816,579 | 0 | G | A | 93.4%
| 684.1
/ 24.2
| 199 | intergenic (‑30/‑97) | rph/yicC | truncated RNase PH/UPF0701 family protein YicC |
| Reads supporting (aligned to +/- strand): ref base G (3/10); new base A (97/87); total (101/98) |
| Fisher's exact test for biased strand distribution p-value = 4.67e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 |
Only 100 of 201 total aligned reads displayed.
CTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGGC > NC_000913/3816530‑3816626
|
cTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTgg > 2:5227903/1‑50 (MQ=255)
cTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTgg < 2:1534343/50‑1 (MQ=255)
aCGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACt > 2:2824777/1‑50 (MQ=255)
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGc < 2:516273/48‑1 (MQ=255)
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTg > 2:5103216/1‑50 (MQ=255)
ggCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgc > 1:1894419/1‑50 (MQ=255)
gCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg < 1:1324721/50‑1 (MQ=255)
ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcgc < 1:5296033/50‑1 (MQ=255)
ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg > 2:1922368/1‑49 (MQ=255)
tgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt > 2:4211408/1‑50 (MQ=255)
tgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt > 2:1151312/1‑50 (MQ=255)
tgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt > 1:4040325/1‑50 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCAtt < 2:1179413/49‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 1:2195197/49‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 2:4882676/49‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 1:4533369/49‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 1:362337/49‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta < 2:3249700/50‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta < 1:2720057/50‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta < 2:1234235/50‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta > 1:5357043/1‑50 (MQ=255)
tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta > 1:1367579/1‑49 (MQ=255)
tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta > 1:322172/1‑49 (MQ=255)
ggACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata > 2:3210783/1‑50 (MQ=255)
ggACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata > 1:1143485/1‑50 (MQ=255)
ggACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata > 1:1572513/1‑50 (MQ=255)
gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata < 1:3761031/49‑1 (MQ=255)
gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata < 1:3545370/49‑1 (MQ=255)
gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATAc > 2:4967230/1‑50 (MQ=255)
aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg < 2:2338173/50‑1 (MQ=255)
aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg > 2:4303730/1‑50 (MQ=255)
aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg < 1:5135135/50‑1 (MQ=255)
aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg > 1:2011349/1‑50 (MQ=255)
cGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACgg < 2:500640/50‑1 (MQ=255)
cGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg > 2:549851/1‑49 (MQ=255)
gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa < 2:5660020/50‑1 (MQ=255)
gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa < 2:3392279/50‑1 (MQ=255)
gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa > 1:5451726/1‑50 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGAc < 2:697466/50‑1 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc < 2:2833359/50‑1 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc < 2:2556079/50‑1 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc > 2:1723255/1‑50 (MQ=255)
atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt > 2:3414107/1‑50 (MQ=255)
atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt < 2:8663/50‑1 (MQ=255)
atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt < 1:2867030/50‑1 (MQ=255)
atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt < 1:2980811/50‑1 (MQ=255)
atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt > 1:85468/1‑50 (MQ=255)
tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACtt > 1:1936174/1‑50 (MQ=255)
tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTAGACGGACtt < 2:3586008/50‑1 (MQ=255)
atTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc > 2:2608826/1‑50 (MQ=255)
atTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc > 2:2506945/1‑50 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc < 2:1008842/50‑1 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc > 1:735844/1‑50 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc < 1:625376/49‑1 (MQ=255)
gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg > 2:4500653/1‑50 (MQ=255)
gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg > 1:1692123/1‑50 (MQ=255)
aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc < 1:941428/50‑1 (MQ=255)
aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc > 2:5411520/1‑50 (MQ=255)
aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc < 1:1843514/50‑1 (MQ=255)
aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg < 2:2163855/49‑1 (MQ=255)
aaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggcg < 1:3920155/50‑1 (MQ=255)
aTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggcgg > 2:1825098/1‑50 (MQ=255)
ctcCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGt > 2:3455353/1‑49 (MQ=255)
ctcCGGCTTGAAACAAATGTGACTGCGCATTAGACGGACTTCCGGCGGt > 2:1805246/1‑49 (MQ=255)
tcCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTa > 1:2189883/1‑50 (MQ=255)
ccGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAt > 2:3838101/1‑50 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGtt < 1:4489947/47‑1 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGtt < 2:3715533/47‑1 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAtt < 2:4382077/50‑1 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAt < 1:2593300/49‑1 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTACCGGCGGtt < 2:3822034/47‑1 (MQ=255)
ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc > 1:3838052/1‑50 (MQ=255)
ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc > 1:459122/1‑50 (MQ=255)
gCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTcc < 1:4958956/50‑1 (MQ=255)
tGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTAt > 2:3498009/1‑50 (MQ=255)
tGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTAt > 2:3107766/1‑50 (MQ=255)
gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTaa > 2:1912863/1‑48 (MQ=255)
gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATc > 1:433617/1‑50 (MQ=255)
aaaCAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc > 2:4740827/1‑50 (MQ=255)
aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc > 1:3386579/1‑50 (MQ=255)
aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc < 2:5386768/50‑1 (MQ=255)
aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc > 2:528258/1‑50 (MQ=255)
aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt < 2:2986643/50‑1 (MQ=255)
aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 2:2910641/1‑50 (MQ=255)
aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 2:2060636/1‑50 (MQ=255)
aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 1:1058901/1‑50 (MQ=255)
aCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTg < 2:1280069/50‑1 (MQ=255)
cAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:2908919/1‑50 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:3350746/1‑49 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:5646752/1‑49 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc < 2:5812268/50‑1 (MQ=255)
aaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc > 1:5783754/1‑49 (MQ=255)
aaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc > 1:3534579/1‑49 (MQ=255)
aaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACa < 2:5260716/50‑1 (MQ=255)
aTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc > 1:552467/1‑48 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg > 1:4676546/1‑50 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg > 2:2878647/1‑50 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg < 1:3110688/50‑1 (MQ=255)
gtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAgg > 1:4841409/1‑50 (MQ=255)
tgGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGGc < 1:787104/50‑1 (MQ=255)
|
CTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGGC > NC_000913/3816530‑3816626
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
