Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F999 I0 R1
|
92 |
76.2 |
6048880 |
97.1% |
5873462 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,829,233 |
C→A |
L97M (CTG→ATG) |
xanP → |
xanthine:H(+) symporter XanP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,829,233 | 0 | C | A | 100.0%
| 198.4
/ NA
| 51 | L97M (CTG→ATG) | xanP | xanthine:H(+) symporter XanP |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (32/19); total (32/19) |
TGGCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGCTGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAT > NC_000913/3829186‑3829279
|
tgGCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtg < 1:5709543/50‑1 (MQ=255)
gCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgtt < 1:1303014/50‑1 (MQ=255)
gCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgtt < 1:3511942/50‑1 (MQ=255)
gCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgtt < 1:2050797/50‑1 (MQ=255)
gCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgt < 1:5891713/49‑1 (MQ=255)
cATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgttg > 1:5473391/1‑50 (MQ=255)
cATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgttg < 1:2429769/50‑1 (MQ=255)
tCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc < 1:5223090/50‑1 (MQ=255)
gATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCt < 1:2583104/49‑1 (MQ=255)
gATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCt < 1:5679214/49‑1 (MQ=255)
gATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTa > 1:2061628/1‑50 (MQ=255)
gATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTa > 1:1714242/1‑50 (MQ=255)
ttattCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTAtt < 1:4541310/50‑1 (MQ=255)
ttattCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTAtt < 1:1335695/50‑1 (MQ=255)
tattCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTAtt > 1:3203178/1‑49 (MQ=255)
attCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTAtt > 1:582308/1‑48 (MQ=255)
cAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAggg > 1:4445333/1‑50 (MQ=255)
aaaTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAggg > 1:4982165/1‑49 (MQ=255)
ttAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCAcc < 1:3463353/50‑1 (MQ=255)
aGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGc > 1:5051603/1‑50 (MQ=255)
ggCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCt < 1:1744614/50‑1 (MQ=255)
ggCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCt < 1:3341000/50‑1 (MQ=255)
ccTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCtt > 1:1923188/1‑49 (MQ=255)
ccTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc < 1:5046001/50‑1 (MQ=255)
cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc > 1:4617432/1‑49 (MQ=255)
cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc > 1:622910/1‑49 (MQ=255)
tGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCaa > 1:2149137/1‑50 (MQ=255)
tGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCaa > 1:4366407/1‑50 (MQ=255)
tGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCaa > 1:1196156/1‑50 (MQ=255)
ggggTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAAc > 1:2557058/1‑50 (MQ=255)
ggTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACtt > 1:6026907/1‑50 (MQ=255)
gTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACttt < 1:401890/50‑1 (MQ=255)
gTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACttt < 1:1717367/50‑1 (MQ=255)
gTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACttt > 1:4690698/1‑50 (MQ=255)
cGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgtt > 1:4226501/1‑50 (MQ=255)
cGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgtt > 1:3808212/1‑50 (MQ=255)
cGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgtt > 1:3773986/1‑50 (MQ=255)
ggTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgttg > 1:5318737/1‑50 (MQ=255)
gTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGc > 1:980761/1‑50 (MQ=255)
ttGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGcc < 1:3447906/50‑1 (MQ=255)
ttGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGcc > 1:3353887/1‑50 (MQ=255)
gCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCg > 1:2602043/1‑50 (MQ=255)
cTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGc > 1:2953132/1‑50 (MQ=255)
tCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCt > 1:3567058/1‑50 (MQ=255)
tCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCt > 1:3244899/1‑50 (MQ=255)
ccGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCt > 1:3539643/1‑49 (MQ=255)
ccGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCt > 1:5852149/1‑49 (MQ=255)
cGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGa > 1:931412/1‑50 (MQ=255)
gggATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAt > 1:5566235/1‑50 (MQ=255)
gggATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAt > 1:2818966/1‑50 (MQ=255)
gggATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAt < 1:2542202/50‑1 (MQ=255)
|
TGGCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGCTGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAT > NC_000913/3829186‑3829279
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
