Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F999 I0 R1
|
96 |
52.5 |
3964927 |
95.8% |
3798400 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,816,579 |
G→A |
intergenic (‑30/‑97) |
rph ← / → yicC |
truncated RNase PH/UPF0701 family protein YicC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,816,579 | 0 | G | A | 100.0%
| 200.1
/ NA
| 51 | intergenic (‑30/‑97) | rph/yicC | truncated RNase PH/UPF0701 family protein YicC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (18/33); total (18/33) |
CGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAG > NC_000913/3816533‑3816624
|
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACt < 1:2719415/49‑1 (MQ=255)
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTg < 1:2252842/50‑1 (MQ=255)
ggCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgc > 1:3602199/1‑50 (MQ=255)
ggCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgc > 1:3092993/1‑50 (MQ=255)
ggCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgc > 1:278760/1‑50 (MQ=255)
ggCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgc < 1:2018153/50‑1 (MQ=255)
ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg > 1:1323158/1‑49 (MQ=255)
tgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt > 1:3630496/1‑50 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt < 1:262803/48‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta < 1:831542/50‑1 (MQ=255)
tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta > 1:2806522/1‑49 (MQ=255)
tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta > 1:2822132/1‑49 (MQ=255)
tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta > 1:473670/1‑49 (MQ=255)
ggACGCATATTGAAATCTCCGGCTTGAAACTAATGTGACTGCGCATtata > 1:2841512/1‑50 (MQ=39)
gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata < 1:2530397/49‑1 (MQ=255)
gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata < 1:292974/49‑1 (MQ=255)
gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtat < 1:672918/48‑1 (MQ=255)
aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg < 1:3769803/50‑1 (MQ=255)
cGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACgg < 1:2492073/50‑1 (MQ=255)
cGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg > 1:3472828/1‑49 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc < 1:3742960/50‑1 (MQ=255)
atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt < 1:3808089/50‑1 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGTCTTcc < 1:3249605/50‑1 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc < 1:1443767/50‑1 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc < 1:1927327/50‑1 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc < 1:1638202/50‑1 (MQ=255)
aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg < 1:959855/49‑1 (MQ=255)
aaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggcg < 1:270649/50‑1 (MQ=255)
ctcCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGt > 1:2761995/1‑49 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTa < 1:2810711/48‑1 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAtt < 1:2564723/50‑1 (MQ=255)
ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc > 1:146400/1‑50 (MQ=255)
ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc < 1:2151633/50‑1 (MQ=255)
gCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTcc > 1:2175564/1‑50 (MQ=255)
cTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCt < 1:1989248/50‑1 (MQ=255)
gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTa < 1:1041815/48‑1 (MQ=255)
gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTAt < 1:2217512/49‑1 (MQ=255)
aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATc < 1:169509/49‑1 (MQ=255)
aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt < 1:2547881/50‑1 (MQ=255)
aCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTg < 1:3266161/50‑1 (MQ=255)
aCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTg < 1:2346064/50‑1 (MQ=255)
aCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTg < 1:629692/50‑1 (MQ=255)
cAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:1617448/1‑50 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:3727511/1‑49 (MQ=255)
aaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc > 1:3410687/1‑49 (MQ=255)
aTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc > 1:1532606/1‑48 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg > 1:385451/1‑50 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg < 1:3150289/50‑1 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg < 1:773422/50‑1 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg < 1:2411200/50‑1 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg < 1:3237627/50‑1 (MQ=255)
|
CGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAG > NC_000913/3816533‑3816624
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
