Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F999 I0 R1
|
97 |
117.0 |
8624996 |
98.0% |
8452496 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,816,579 |
G→A |
intergenic (‑30/‑97) |
rph ← / → yicC |
truncated RNase PH/UPF0701 family protein YicC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,816,579 | 0 | G | A | 100.0%
| 452.8
/ NA
| 114 | intergenic (‑30/‑97) | rph/yicC | truncated RNase PH/UPF0701 family protein YicC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (54/60); total (54/60) |
Only 100 of 114 total aligned reads displayed.
ACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGG > NC_000913/3816532‑3816625
|
aCGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACt > 1:4799577/1‑50 (MQ=255)
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACt < 1:7728806/49‑1 (MQ=255)
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACt < 1:5717309/49‑1 (MQ=255)
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTg < 1:4207816/50‑1 (MQ=255)
cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTg < 1:5920811/50‑1 (MQ=255)
cGGCCTGCTGGAAGCATATTGAAATCTCCGGCTTGAAACAAATGTGACt < 1:7602676/49‑1 (MQ=38)
ggCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgc < 1:8239906/50‑1 (MQ=255)
ggCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgc > 1:5381192/1‑50 (MQ=255)
ggCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgc > 1:5652286/1‑50 (MQ=255)
ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcgc < 1:4279081/50‑1 (MQ=255)
ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg > 1:2170100/1‑49 (MQ=255)
ctgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCa > 1:2077103/1‑50 (MQ=255)
tgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt > 1:7063652/1‑50 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 1:4189527/49‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 1:6795930/49‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 1:7213070/49‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt < 1:6092417/48‑1 (MQ=255)
ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta < 1:3614322/50‑1 (MQ=255)
tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta > 1:1023524/1‑49 (MQ=255)
ggACGCATATTGAAATCTCCGGCTTGAAACAAATGCGACTGCGCATtata > 1:8476608/1‑50 (MQ=39)
gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata < 1:6192291/49‑1 (MQ=255)
gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtat < 1:3656582/48‑1 (MQ=255)
gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATAc < 1:4599761/50‑1 (MQ=255)
gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATAc < 1:3748686/50‑1 (MQ=255)
aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg < 1:5982922/50‑1 (MQ=255)
aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg < 1:4808001/50‑1 (MQ=255)
aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg < 1:7487039/50‑1 (MQ=255)
aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg < 1:56262/50‑1 (MQ=255)
gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa > 1:5178014/1‑50 (MQ=255)
gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa > 1:2091095/1‑50 (MQ=255)
gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa > 1:5220771/1‑50 (MQ=255)
gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa < 1:5972218/50‑1 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc > 1:7173331/1‑50 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc > 1:7161632/1‑50 (MQ=255)
cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc > 1:929457/1‑50 (MQ=255)
atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt > 1:7916933/1‑50 (MQ=255)
atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt > 1:2719545/1‑50 (MQ=255)
tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACtt > 1:5685324/1‑50 (MQ=255)
tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACtt > 1:5845798/1‑50 (MQ=255)
tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACtt < 1:5011707/50‑1 (MQ=255)
tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACtt > 1:2245780/1‑50 (MQ=255)
atTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc > 1:2472184/1‑50 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc > 1:7463715/1‑50 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc < 1:628811/50‑1 (MQ=255)
ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc < 1:3799982/50‑1 (MQ=255)
tGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcg > 1:6390867/1‑50 (MQ=255)
gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg > 1:49685/1‑50 (MQ=255)
gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg > 1:3741205/1‑50 (MQ=255)
gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcg < 1:1739352/49‑1 (MQ=255)
gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcg < 1:257712/49‑1 (MQ=255)
gAAATCTCCGGCTTGAAACAAATGTGACAGCGCATTATACGGACTTCcg < 1:1692822/49‑1 (MQ=255)
aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc > 1:6205829/1‑50 (MQ=255)
aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc < 1:249012/50‑1 (MQ=255)
aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc < 1:1965023/50‑1 (MQ=255)
aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg < 1:8473005/49‑1 (MQ=255)
aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg < 1:304021/49‑1 (MQ=255)
aTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggcgg > 1:689365/1‑50 (MQ=255)
tctcCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGt > 1:6489261/1‑50 (MQ=255)
tcCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTa > 1:467526/1‑50 (MQ=255)
tcCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTa > 1:7305955/1‑50 (MQ=255)
ccGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAt > 1:4360732/1‑50 (MQ=255)
ccGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAt > 1:1829488/1‑50 (MQ=255)
ccGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAt > 1:8368634/1‑50 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGtt < 1:1849872/47‑1 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGt < 1:8175462/46‑1 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTa < 1:7436208/48‑1 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTa < 1:130557/48‑1 (MQ=255)
cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAtt < 1:2524697/50‑1 (MQ=255)
ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc > 1:3051689/1‑50 (MQ=255)
ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc > 1:2555629/1‑50 (MQ=255)
ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc < 1:6232293/50‑1 (MQ=255)
ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc > 1:881424/1‑50 (MQ=255)
ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc > 1:4469719/1‑50 (MQ=255)
gCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTcc > 1:5672032/1‑50 (MQ=255)
ttGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTa > 1:6653022/1‑50 (MQ=255)
ttGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTa > 1:4449452/1‑50 (MQ=255)
gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTa < 1:20075/48‑1 (MQ=255)
gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTAt < 1:1651846/49‑1 (MQ=255)
aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc < 1:1281354/50‑1 (MQ=255)
aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc > 1:3797805/1‑50 (MQ=255)
aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATc < 1:2885783/49‑1 (MQ=255)
aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 1:6238485/1‑50 (MQ=255)
aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 1:2241578/1‑50 (MQ=255)
aCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 1:2660509/1‑49 (MQ=255)
aCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 1:232675/1‑49 (MQ=255)
aCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTg < 1:4740043/50‑1 (MQ=255)
aCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTg < 1:5357589/50‑1 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:538082/1‑49 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc < 1:2465977/50‑1 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc < 1:6700711/50‑1 (MQ=255)
aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc < 1:4954836/50‑1 (MQ=255)
aaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc > 1:3796711/1‑49 (MQ=255)
aaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACa < 1:5200560/50‑1 (MQ=255)
aTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc > 1:5878325/1‑48 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg < 1:6304697/50‑1 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg < 1:4060444/50‑1 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg < 1:3180159/50‑1 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg < 1:5370763/50‑1 (MQ=255)
tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg > 1:3071774/1‑50 (MQ=255)
gtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAgg > 1:7523574/1‑50 (MQ=255)
|
ACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGG > NC_000913/3816532‑3816625
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
