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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F999 I0 R1	79	90.6	6749123	97.8%	6600642	49.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,888,432	Δ18,167 bp		tnaC–bglG	17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3888432	3906598	18167	78 [0]	[0] 78	tnaC–bglG	tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3888431	0 (0.000)	77 (0.890)	53/96	0.0	100%	intergenic (+239/‑4)	mnmE/tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
*	?	NC_000913	3906599 =	0 (0.000)	77 (0.890)	53/96	0.0	100%	intergenic (‑32/+254)	bglG/phoU	transcriptional antiterminator BglG/negative regulator of the pho regulon

GATK/CNVnator alignment

N/A