Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F236 I1 R1 155 93.2 2393300 97.8% 2340647 180.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,749,326 A→C D32A (GAT→GCT)  sgbU → putative L‑xylulose 5‑phosphate 3‑epimerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,749,3260AC100.0% 207.8 / NA 58D32A (GAT→GCT) sgbUputative L‑xylulose 5‑phosphate 3‑epimerase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (29/29);  total (29/29)

TTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGC  >  NC_000913/3749091‑3749555
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                     
ttcccccTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCttt                                                                                                                                                                                                                                    <  2:121760/236‑1 (MQ=255)
        gctgACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGGGCGC‑‑GTGCGTAATCCTCAGGTAGGGATTTATGAAAAAGCGCTGGCGGAAGATCTCTCCTGGGCGGAGCGGCTGGGGCTGGCAAAAAACGTCGGGTTTTCTTTTGTCTaaa                                                                                                                                                                                                                            >  2:708728/1‑239 (MQ=255)
                         tAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGGGCTGGCAAAAAGCTGCGGGTTTGCTTTTTTCGAAATGTCGGGGGGTGaaaac                                                                                                                                                                                                           >  1:649691/1‑237 (MQ=255)
                                 tCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GGGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGGGCTGGCAAAAACCTGCGGGTTTGCTTTTTTCGAAAAGTCGGTGGGTGGAAccaccgcacg                                                                                                                                                                                                   >  2:1161989/1‑231 (MQ=255)
                                 tCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGGGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGGGCTGGGCAAAAGCTGCGGGTTTGCTTTTTGTGAAACGTCGGTGGGTGAAAAcgacgacca                                                                                                                                                                                                   >  2:946677/1‑236 (MQ=255)
                                     cgTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGGTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGGCGAACGGct                                                                                                                                                                                                >  1:1058196/1‑238 (MQ=255)
                                         aaaGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCAc                                                                                                                                                                                           >  1:843143/1‑239 (MQ=255)
                                                       cgggcgggCACTGGCCGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAg                                                                                                                                                                              <  2:856218/238‑1 (MQ=255)
                                                        gggcgggcACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGaa                                                                                                                                                                                                                             <  2:7545/190‑1 (MQ=255)
                                                        gggcgggcACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGaa                                                                                                                                                                                                                             >  1:7545/1‑190 (MQ=255)
                                                                    gCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAgg                                                                                                                                                                 >  1:613100/1‑238 (MQ=255)
                                                                         cgcgGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGa                                                                                                                                                                <  1:946677/234‑1 (MQ=255)
                                                                                           aGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGTGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCgatgat                                                                                                                                          <  1:655384/238‑1 (MQ=255)
                                                                                                ctggcGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGaaa                                                                                                                                     <  1:247779/238‑1 (MQ=255)
                                                                                                ctggcGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGaaa                                                                                                                                     <  1:190483/238‑1 (MQ=255)
                                                                                                ctggcGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGaaa                                                                                                                                     <  1:182578/238‑1 (MQ=255)
                                                                                                 tggcGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAAACGACGAACGGCCCTCACGTCTTGACTGGAGCGCCGCACAAAGGACCTCGCTGGTTGCCCCGATGATCGAAACa                                                                                                                                   >  2:700562/1‑239 (MQ=255)
                                                                                                  ggcGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAg                                                                                                                                  <  1:892313/239‑1 (MQ=255)
                                                                                                  ggcGATTTCCATGCGCAAATCGACGCGATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAg                                                                                                                                  <  2:574744/239‑1 (MQ=255)
                                                                                                    cGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTg                                                                                                                                                                                 <  2:359146/190‑1 (MQ=255)
                                                                                                    cGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTg                                                                                                                                                                                 >  1:359146/1‑190 (MQ=255)
                                                                                                       tttCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGtt                                                                                                                             <  1:708728/239‑1 (MQ=255)
                                                                                                                gcAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATccc                                                                                                                     <  2:843143/238‑1 (MQ=255)
                                                                                                                  aaaTCGACGCTATCTGGGGAGGTGCGG‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGt                                                                                                                   <  1:362806/238‑1 (MQ=255)
                                                                                                                   aaTCGACGTTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCg                                                                                                                 <  2:727738/239‑1 (MQ=255)
                                                                                                                   aaTCGACGCTATCTGGGGAGGTTCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCg                                                                                                                 <  1:282791/239‑1 (MQ=255)
                                                                                                                   aaTCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCg                                                                                                                 <  2:613100/239‑1 (MQ=255)
                                                                                                                         cGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCg                                                                                                                                                                                                                       >  2:839115/1‑131 (MQ=255)
                                                                                                                         cGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCg                                                                                                                                                                                                                       <  1:839115/131‑1 (MQ=255)
                                                                                                                          gCTATCTGGGGAGGTGCGCGTGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGAtgtg                                                                                                            <  1:112806/239‑1 (MQ=255)
                                                                                                                                        tGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGCTGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGcac                                                                                                 >  2:845684/1‑234 (MQ=255)
                                                                                                                                        tGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGa                                                                                                                         >  2:139496/1‑210 (MQ=255)
                                                                                                                                        tGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGa                                                                                                                         <  1:139496/210‑1 (MQ=255)
                                                                                                                                        tGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACAtcg                                                                                             <  1:259759/238‑1 (MQ=255)
                                                                                                                                        tGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACAtcg                                                                                             >  1:719680/1‑238 (MQ=255)
                                                                                                                                        tGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACAtcg                                                                                             >  2:259759/1‑238 (MQ=255)
                                                                                                                                          cgc‑‑gTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCg                                                                                                                 >  1:1178210/1‑216 (MQ=255)
                                                                                                                                          cgc‑‑gTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCg                                                                                                                 <  2:1178210/216‑1 (MQ=255)
                                                                                                                                          cgc‑‑gTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGAGCCCGTCGATGTGCCTGTCCGCAAAtcgtc                                                                                           >  1:818831/1‑238 (MQ=255)
                                                                                                                                                    tAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGGTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGGTCCCGTCGATGTGCCTGTCCGCACAtcgtc                                                                                           >  1:691019/1‑230 (MQ=255)
                                                                                                                                                                  ggATTTATGAAAAAGCGCTGGCGCAAGATCTCTCCTGGCCGGAGCGGGTGGTGCTGGCAAAAAGCTGCTGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCGCGTCTTGACTGGAGCGCCGCACAAAGGCCTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCt                                                                                        <  1:457276/219‑1 (MQ=255)
                                                                                                                                                                  ggATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCtt                                                                                                                                                                                                                                     <  1:845546/78‑1 (MQ=255)
                                                                                                                                                                  ggATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCtt                                                                                                                                                                                                                                     >  2:845546/1‑78 (MQ=255)
                                                                                                                                                                        aTGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTTGTAGCCGTGACGGGGcc                                                              >  2:831449/1‑238 (MQ=255)
                                                                                                                                                                            aaaaGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGGGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGGGGATGAAACCGACGAACGGCCCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGGTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGGCGATGTGCCGGTCCGCACATCGGCGCTTTCCCTTTgg                                                                              >  2:457276/1‑219 (MQ=255)
                                                                                                                                                                              aaGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTgcgc                                                        >  1:218386/1‑239 (MQ=255)
                                                                                                                                                                                         aaaGATCTCTCCTGGCCGGGGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGgcgc                                              <  1:828372/238‑1 (MQ=255)
                                                                                                                                                                                           aGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCggg                                           >  1:712472/1‑239 (MQ=255)
                                                                                                                                                                                                  tcCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCCCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCAt                                    >  1:166095/1‑239 (MQ=255)
                                                                                                                                                                                                         cGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTaaa                             <  1:831449/239‑1 (MQ=255)
                                                                                                                                                                                                            aGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGGGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCg                          >  1:648773/1‑239 (MQ=255)
                                                                                                                                                                                                            aGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAAAGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCg                          >  1:401162/1‑239 (MQ=255)
                                                                                                                                                                                                                 cTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAg                                                                                                                                                                              >  1:291519/1‑86 (MQ=255)
                                                                                                                                                                                                                 cTGGTGCTGGCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAg                                                                                                                                                                              <  2:291519/86‑1 (MQ=255)
                                                                                                                                                                                                                          gCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGAtg                                                                                                              >  2:1164501/1‑141 (MQ=255)
                                                                                                                                                                                                                          gCAAAAAGCTGCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGAtg                                                                                                              <  1:1164501/141‑1 (MQ=255)
                                                                                                                                                                                                                                   tGCGGTTTTGCTTTTGTCGAAATGGCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGAtctc     <  2:648773/237‑1 (MQ=255)
                                                                                                                                                                                                                                    gCGGTTTTGCTTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGc  >  1:657351/1‑239 (MQ=255)
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                     
TTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGC‑‑GTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGC  >  NC_000913/3749091‑3749555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A