Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F125 I1 R1 45 113.1 5779376 92.5% 5345922 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,397,557 G→T G49V (GGT→GTT)  mutL → methyl‑directed mismatch repair protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,397,5570GT98.8% 306.5 / NA 85G49V (GGT→GTT) mutLmethyl‑directed mismatch repair protein
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base T (47/37);  total (48/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTGAGGTGGTCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATC  >  NC_000913/4397461‑4397651
                                                                                                |                                                                                              
gtgaggtgGTCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTgg                                                                                             >  2:1415314/1‑100 (MQ=255)
 tgaggtgGTCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTggg                                                                                            <  2:970434/100‑1 (MQ=255)
  gaggttGGCGAGGGATCTGCGTCGATAGTCAAGGAACTGGTGCAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTaggg                                                                                           <  1:2701759/100‑1 (MQ=255)
  gaggtgGTCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTgggg                                                                                           <  1:2561848/100‑1 (MQ=255)
      tggtCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGaa                                                                                       <  2:29263/100‑1 (MQ=255)
       ggtCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCCGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGaaa                                                                                      >  2:1716350/1‑100 (MQ=255)
       ggtCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGaaa                                                                                      >  1:2682593/1‑100 (MQ=255)
       ggtCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGaaa                                                                                      <  2:197473/100‑1 (MQ=255)
          cGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACtt                                                                                   >  2:2549179/1‑100 (MQ=255)
          cGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACtt                                                                                   >  2:1343818/1‑100 (MQ=255)
               gACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCg                                                                              >  1:2730856/1‑100 (MQ=255)
               gACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCg                                                                              <  2:1054638/100‑1 (MQ=255)
               gACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCg                                                                              >  2:1304654/1‑100 (MQ=255)
               gACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCg                                                                              <  1:1976146/100‑1 (MQ=255)
                 ccTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCa                                                                            >  2:623678/1‑100 (MQ=255)
                 ccTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCa                                                                            <  2:523320/100‑1 (MQ=255)
                   tGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCAtt                                                                          <  2:533620/100‑1 (MQ=255)
                      gTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGt                                                                       <  1:63437/100‑1 (MQ=255)
                       tCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTg                                                                      <  1:1936365/100‑1 (MQ=255)
                        cGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGa                                                                     >  1:642791/1‑100 (MQ=255)
                        cGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGa                                                                     >  2:607603/1‑100 (MQ=255)
                         ggTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGAt                                                                    >  1:2243698/1‑100 (MQ=255)
                         ggTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGAt                                                                    >  1:1336169/1‑100 (MQ=255)
                         ggTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGAt                                                                    >  2:8337/1‑100 (MQ=255)
                          gTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATa                                                                   <  1:969718/100‑1 (MQ=255)
                            aGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAAc                                                                 >  1:2690391/1‑100 (MQ=255)
                             gTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACg                                                                >  1:384395/1‑100 (MQ=255)
                               cAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGc                                                              >  2:1208278/1‑100 (MQ=255)
                               cAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGc                                                              >  1:1830119/1‑100 (MQ=255)
                                aaaGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCt                                                             >  2:1234094/1‑100 (MQ=255)
                                 aaGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTg                                                            <  2:384397/100‑1 (MQ=255)
                                  aGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGc                                                           <  1:2549157/100‑1 (MQ=255)
                                    aaCTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCgg                                                         <  2:659843/100‑1 (MQ=255)
                                      cTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTa                                                       <  1:854068/100‑1 (MQ=255)
                                         gTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCa                                                    >  2:2252833/1‑100 (MQ=255)
                                         gTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCa                                                    >  1:931307/1‑100 (MQ=255)
                                           ggAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCaaa                                                  >  2:2264396/1‑100 (MQ=255)
                                               aaCAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAg                                              <  1:1886231/100‑1 (MQ=255)
                                                aCATCCTCGATGCAGGTGCGACTCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGa                                             <  2:2695950/100‑1 (MQ=255)
                                                  aGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCTGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATg                                           <  2:2028765/100‑1 (MQ=255)
                                                  aGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATg                                           <  1:1415305/100‑1 (MQ=255)
                                                  aGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATg                                           <  2:1377363/100‑1 (MQ=255)
                                                    ccTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAg                                         <  2:2593809/100‑1 (MQ=255)
                                                     cTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgc                                        >  2:1369696/1‑100 (MQ=255)
                                                        gATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctgg                                     >  1:1303499/1‑100 (MQ=255)
                                                          tGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAATAGATGAgctggag                                   <  2:1956297/100‑3 (MQ=255)
                                                          tGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGAAAAAAAAAAAAAAAAGATGAgctggcg                                   <  1:623676/100‑1 (MQ=255)
                                                            cAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgct                                 >  1:2608079/1‑100 (MQ=255)
                                                            cAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgct                                 >  2:1525890/1‑100 (MQ=255)
                                                            cAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgc                                  >  1:1248254/1‑99 (MQ=255)
                                                            cAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATAAAAAAAGATGAgctggcgct                                 >  2:956603/1‑100 (MQ=255)
                                                             aGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgctg                                >  1:1271493/1‑100 (MQ=255)
                                                             aGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgctg                                <  1:1476424/100‑1 (MQ=255)
                                                             aGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGAGAAACTTATCCGCATTCGTGATAACGGAAAAAAAAAAAAAAAAGATGAgctggcgctg                                <  1:470419/100‑1 (MQ=255)
                                                              ggTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgctgg                               <  1:2526315/100‑1 (MQ=255)
                                                                tGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgctggcg                             <  2:1741434/100‑1 (MQ=255)
                                                                tGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgctggcg                             >  1:2266331/1‑100 (MQ=255)
                                                                      cgcgttCGATATCAATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCt                       >  2:338717/6‑100 (MQ=255)
                                                                         tATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGt                    >  1:1145603/1‑100 (MQ=255)
                                                                         tATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGt                    >  1:1148801/1‑100 (MQ=255)
                                                                            cGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCAt                 >  2:428114/1‑100 (MQ=255)
                                                                            cGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCAt                 <  2:931310/100‑1 (MQ=255)
                                                                            cGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCAt                 >  2:1877758/1‑100 (MQ=255)
                                                                             gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg                >  2:2175985/1‑100 (MQ=255)
                                                                             gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg                >  2:2062919/1‑100 (MQ=255)
                                                                             gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg                >  1:2884973/1‑100 (MQ=255)
                                                                             gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg                >  2:353341/1‑100 (MQ=255)
                                                                             gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg                <  2:1303506/100‑1 (MQ=255)
                                                                             gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg                >  2:553910/1‑100 (MQ=255)
                                                                               ttccgatctCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGcc              <  2:177602/92‑1 (MQ=255)
                                                                               tatTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGcc              <  1:790051/100‑1 (MQ=255)
                                                                               tatTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGcc              <  2:1248260/100‑1 (MQ=255)
                                                                                 ttGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccac            >  1:898751/1‑100 (MQ=255)
                                                                                  tGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccacc           <  2:2652567/100‑1 (MQ=255)
                                                                                  tGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccacc           <  2:853037/100‑1 (MQ=255)
                                                                                  tGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCGGCGGTCTCAAAAAAGATGAGGTGGCGCTGGCGCTGGCTCGTCATGcc              >  1:204933/1‑97 (MQ=255)
                                                                                   gATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccacca          >  1:2768844/1‑100 (MQ=255)
                                                                                   gATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccacca          >  1:901507/1‑100 (MQ=255)
                                                                                   gATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccacca          >  2:1441960/1‑100 (MQ=255)
                                                                                    atatCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAg         <  1:2525321/100‑1 (MQ=255)
                                                                                     tatCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGt        >  2:548783/1‑100 (MQ=255)
                                                                                        cGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccagatcggaa     >  1:177601/1‑92 (MQ=255)
                                                                                          aaCGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAAt   >  2:1044632/1‑100 (MQ=255)
                                                                                          aaCGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAAt   <  1:1979228/100‑1 (MQ=255)
                                                                                           aCGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATc  >  1:1815332/1‑100 (MQ=255)
                                                                                                |                                                                                              
GTGAGGTGGTCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATC  >  NC_000913/4397461‑4397651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A