Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F244 I0 R1
|
270 |
114.4 |
5840133 |
93.3% |
5448844 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,985 |
T→C |
32.0% |
intergenic (‑195/+113) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,985 | 0 | T | C | 32.0%
| 326.7
/ 199.3
| 219 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (71/78); new base C (63/7); total (134/85) |
| Fisher's exact test for biased strand distribution p-value = 3.94e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.44e-03 |
Only 100 of 223 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084
|
tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 1:269617/1‑100 (MQ=255)
tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 1:1364666/1‑100 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGCCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 2:792327/1‑100 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 2:314627/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:481410/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATca > 2:1258923/1‑99 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 2:438106/1‑100 (MQ=255)
cGGATGGCGCTGCACGCAGAGAAAAAACGCCACCGGGTATACAGATTGTTGACAACATGCGCTTTGTTTATGCAGGATGAGGCGTTAACGCCTTATCCg > 1:2661478/1‑99 (MQ=21)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 2:2319675/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:680083/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:2060932/100‑2 (MQ=37)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:1809887/100‑1 (MQ=255)
tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa > 2:223994/1‑100 (MQ=255)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 1:1311053/1‑100 (MQ=255)
tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaagt > 1:1770645/1‑98 (MQ=255)
tGCACGCACAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCTGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa < 1:1911095/98‑1 (MQ=255)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:1431514/1‑100 (MQ=255)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 2:1597978/1‑100 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 2:11003/1‑100 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 2:1124983/100‑1 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 2:638664/100‑1 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:2502866/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:2710107/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:1529638/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:1515062/100‑1 (MQ=255)
agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaa < 1:745594/100‑1 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 2:212578/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:164047/1‑100 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt > 2:2791515/1‑100 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc < 1:334449/98‑1 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑At > 1:1897524/1‑98 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑Atttt > 1:470312/1‑100 (MQ=255)
aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTc < 1:2169490/100‑1 (MQ=255)
aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTc > 1:1246824/1‑100 (MQ=255)
ccgATTGTTGACAAAGTGCGCTTTGTTCATCCCAGAAGCGGCGTTACCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑AATTTC‑‑g < 1:1740624/98‑1 (MQ=17)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑g < 2:2439752/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑Gt < 1:223993/99‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTa > 2:814308/1‑100 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTa < 1:1719291/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGcc < 1:105792/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGcc < 1:2887420/100‑1 (MQ=255)
ataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGcc > 1:941227/5‑100 (MQ=18)
aCAAAGTCCGCTTTGTTTATGCCGGATGCGGCCTTAACGCCTTATCCGGCCTAC‑AAAATCGTTCAAAGTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGAt < 1:2857788/100‑1 (MQ=18)
aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAgagatcggaa > 2:1174410/1‑91 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGc > 2:924255/1‑100 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCg < 2:903783/100‑1 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCgg < 1:1544549/100‑1 (MQ=255)
tGCGCTTTGTTTATGACGGATGCGGCGTTAACGCCTTATCCTGCCTAC‑AAAATCGTGCAAATTCTATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCg < 1:835977/99‑1 (MQ=255)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCgg > 2:208679/1‑99 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAgcg > 2:868241/1‑100 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:2104916/100‑1 (MQ=255)
ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGC‑‑A‑A‑TATGAC‑‑GTAGGCCTGATAAGCGTAGCGCATCa < 2:2810056/94‑1 (MQ=18)
ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGC‑‑AAG‑ATTTTC‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:1850542/7‑100 (MQ=17)
ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGC‑‑AGG‑ATACGT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:2034384/7‑100 (MQ=18)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:1281196/100‑1 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:1949783/1‑100 (MQ=255)
tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAAATTGTGTAAATTCAATAAATTGA‑‑TCG‑ATCCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:1191559/6‑100 (MQ=18)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg > 2:290374/1‑100 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:689519/100‑1 (MQ=255)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑AGG‑AGCTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2277299/4‑100 (MQ=17)
taggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg > 1:2308767/4‑99 (MQ=17)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGACTGATAAGCGGAGCGCATCAgg > 1:1303748/1‑100 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGC‑‑AAT‑CTTGTG‑‑GTAGGCGTGATAAGCATCGCGCATCAGGc > 1:1965053/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑AGG‑ACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1385275/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATAGATTGC‑‑ACC‑ATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1860045/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑AGG‑AGCTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2176140/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGC‑‑AGG‑ATACGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1079666/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAACCGCGCAAATTCAATATATTGCGGAGA‑AAAT‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 2:2657290/3‑99 (MQ=21)
aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:1024208/3‑100 (MQ=18)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:1792401/1‑100 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCGGATAAGCGGAGCGCATCAGGCa < 1:1687989/100‑1 (MQ=255)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑AGG‑ACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1554101/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑A‑ATCTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2453599/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑AGG‑AGTTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:2019648/2‑100 (MQ=21)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:154357/1‑100 (MQ=255)
gCCGGATAAGGCGTTCGCGCCGCATCCGGCCTAC‑AACAGTTTGCAAATTCAATAAATTGC‑‑AGA‑ATTCAT‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAt > 1:2865696/1‑100 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑AGG‑ACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1312645/1‑99 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑AGG‑AGCTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtt > 1:2731010/8‑97 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑AGA‑AACCTT‑‑GTCGGCATGATAAGCGTAGCGCCTCAGGCAgttt > 2:1875313/7‑100 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑AGA‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2284534/7‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑AGA‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:22064/7‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑AGA‑GTTCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 2:1618325/7‑99 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑AGG‑ACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2382077/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGC‑‑AGG‑GACTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCagctt > 2:1489592/7‑96 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCATAC‑AAAACTGTGCAAATTCAATATATTGC‑‑AGG‑AAACAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAgttt > 1:2247331/7‑100 (MQ=18)
gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGC‑‑AGGGACTAT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCagcttt > 2:1418324/6‑95 (MQ=21)
gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGC‑‑AGA‑GATTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAatttt > 2:954736/6‑100 (MQ=17)
acgcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:1864962/98‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:1720868/1‑100 (MQ=255)
ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt < 1:907132/100‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:1107207/100‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 1:2099439/1‑100 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 2:614006/1‑100 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:1102315/100‑1 (MQ=255)
ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:575528/100‑1 (MQ=255)
ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:2082224/100‑1 (MQ=255)
aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:581193/1‑100 (MQ=255)
ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATGAGCGGAGTGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:379860/1‑99 (MQ=255)
cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc > 2:254796/1‑100 (MQ=255)
tATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATGTC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt < 1:1574657/100‑1 (MQ=255)
|
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
