Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F210 I0 R1
|
188 |
159.1 |
7866933 |
93.3% |
7339848 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,985 |
T→C |
30.7% |
intergenic (‑195/+113) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,985 | 0 | T | C | 30.7%
| 441.0
/ 239.7
| 287 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (90/107); new base C (77/10); total (169/118) |
| Fisher's exact test for biased strand distribution p-value = 2.62e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.66e-03 |
Only 100 of 291 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084
|
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2410711/1‑100 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCATAGCGTCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 1:522855/100‑1 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 1:2067364/100‑1 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 1:1515046/100‑1 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCACATTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 1:2094199/1‑100 (MQ=255)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTGATCCGGc < 2:1118786/100‑1 (MQ=255)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:212884/100‑1 (MQ=37)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:3780093/99‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 1:1762180/100‑3 (MQ=37)
tGGCGCTTCACGTTTAGGTACAGCGCTATCGTGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑a < 1:2349052/100‑1 (MQ=12)
tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑a < 2:46708/100‑1 (MQ=255)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑aaa < 2:2768549/100‑3 (MQ=25)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑aaa < 1:2142847/100‑3 (MQ=25)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAATGAGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aa > 1:992641/1‑100 (MQ=255)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaa > 2:1200600/1‑100 (MQ=255)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCATTATCCGGCCT‑‑AC‑AAAATc > 2:3172248/1‑100 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCg < 1:415612/100‑1 (MQ=255)
aCGCAGAGGCACAGGGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATACGGCCT‑‑CC‑AAAATCGt > 2:2862386/1‑100 (MQ=255)
aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt > 2:2514592/1‑100 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCa > 2:166820/1‑100 (MQ=255)
agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCaa > 2:3518179/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTTACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtt < 1:1107384/100‑1 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc > 2:39680/1‑100 (MQ=255)
gCACAGCGCAACCGGGTATACAGATTGTTTACAAAGTGTGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtcc < 1:2655158/100‑3 (MQ=18)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCa > 2:1227680/1‑100 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt < 2:694770/100‑1 (MQ=255)
aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATa < 2:1793287/100‑1 (MQ=255)
gcCACCGTGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAt < 1:1936597/100‑1 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAt > 2:3005950/1‑100 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAt > 1:781340/1‑100 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAtt < 1:3307646/100‑1 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTg > 1:2690150/1‑100 (MQ=255)
ccGGTTATACAGATTGTTGACAAATTTCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGc < 1:3398284/99‑1 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑Ga‑a > 1:2722163/1‑97 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑tt > 2:1985342/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCg < 2:1826718/100‑1 (MQ=255)
gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAgg > 2:3770045/7‑100 (MQ=18)
gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAgg > 2:3812832/7‑100 (MQ=18)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGcc < 1:291382/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AA‑TTTCGTAGGcc < 2:2044688/100‑1 (MQ=255)
ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCt > 2:1525194/1‑100 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGAt < 1:3460860/100‑1 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCtagat > 1:3271586/1‑96 (MQ=255)
aaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAg < 1:3469475/100‑1 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCg < 1:246085/100‑1 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCgg < 1:1694237/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAgc > 2:2706405/1‑100 (MQ=255)
gcTTTGTTTATGCCGGATGCGGAGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAgc > 2:854370/1‑100 (MQ=255)
gcTTTGTATATACCTGATGCTGCGTTAACACCTTATTCGGCCA‑‑AC‑AAAATAGTGCAAATTCATTATATTGCA‑GA‑AT‑TTTCGTAGTCCTGATCAGCgtata < 2:3336612/100‑5 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAgcg < 2:581198/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAgcg > 1:1099675/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAgcg > 1:1172899/1‑100 (MQ=255)
ttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑CAT‑GTAGGCCTGATAAGCGTAGCGCa > 1:3615220/9‑100 (MQ=18)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCAt > 2:1263790/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTCTCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATc > 2:3658973/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑ATTCGTAGGCCTGATAAGCGGAGCGCATc > 1:2634574/1‑100 (MQ=255)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCa < 2:3100519/100‑1 (MQ=255)
tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑TCACGTAGGCCTGATAAGCGTAGCGCATCa > 1:691795/6‑100 (MQ=14)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATAGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAg < 2:2414482/100‑1 (MQ=255)
gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAg > 1:3028124/5‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AA‑CCACGTAGGCCTGATAAACGTAGAGCATCaag > 1:1678594/4‑98 (MQ=14)
aggCCGGATAAGGCGTTTACGCCGCATCTGGCCT‑‑AC‑AAATTCTTCCAAATTCAATATATTGCA‑GA‑AA‑TCATGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2490923/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTGTGCAAATTCAATATATTGCA‑GG‑AA‑ACACGTAGGCCTGATAAGCGAAGCGCATCAGGc > 1:225326/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACCTTGCTAATTCAATATATTGCA‑GG‑GA‑CTATGTAGGCCTGATAAGCATAGCGCATCAGGc > 1:3165231/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑‑AAACCGCGCAAATTCAATATATTGCG‑GAGAA‑AAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 2:2174068/3‑99 (MQ=18)
tGCCGGATGCGGCGTTAACGCCTTATACGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAAGCCTGATAAGCGGAGCGCATCAGGCa > 2:290824/1‑100 (MQ=255)
ggCCGGATAAGGCGTTCGCGCCGCATCCGGCCT‑‑AC‑AAAAGTTTGCAAATTCAATAAATTGCA‑GA‑AT‑TCATGTAGGCCTGATAAGCGAAGCGCATCAGGCa > 2:3572191/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GA‑A‑‑CCAAGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:858175/2‑100 (MQ=17)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑AT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2602120/2‑100 (MQ=21)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1455443/1‑100 (MQ=255)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2806682/1‑99 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CA‑AT‑CCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1647455/9‑98 (MQ=18)
ccGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:3260231/1‑100 (MQ=255)
ccGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:3102731/1‑100 (MQ=255)
ccGGATAAGGCGTTTACGCCGCATCCGGCATAAAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1961409/1‑100 (MQ=17)
cggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg > 1:2950735/8‑99 (MQ=18)
cGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 1:60220/1‑100 (MQ=255)
ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:2218687/7‑98 (MQ=21)
ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCGTGCAAATTCAATACATTGCATGG‑GC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 2:2089127/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1605903/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑GAAATCGTGCTAATTCAATATATTGTG‑GG‑CT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2016312/7‑96 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑GA‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:2278495/7‑100 (MQ=17)
ggataaggcgTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:534952/7‑100 (MQ=18)
gataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttatg > 1:1355078/6‑97 (MQ=21)
aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1875461/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1197727/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2571630/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:2382609/1‑100 (MQ=255)
cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:2861154/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:3319050/99‑1 (MQ=255)
gcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccctt < 2:1021377/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAGTTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:1265379/100‑1 (MQ=255)
aaCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:1431861/1‑100 (MQ=255)
aCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:2239539/100‑1 (MQ=255)
cGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGTA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa < 1:46533/100‑1 (MQ=255)
cGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATAAGGCATTTTTGCCTTTGCCATCa > 1:1015696/1‑100 (MQ=255)
gCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 1:2389510/1‑100 (MQ=255)
cTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAATc < 2:261438/100‑1 (MQ=255)
ttATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:1551482/100‑1 (MQ=255)
tATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TAGCGTAGGCCTGATAAGCGGAGCGCATCAGGCAGTTTTGCCTTTGCCATCAGTGtt > 2:946154/1‑100 (MQ=17)
|
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
