Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F201 I0 R1
|
306 |
176.9 |
8831342 |
93.4% |
8248473 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,985 |
T→C |
42.0% |
intergenic (‑195/+113) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,985 | 0 | T | C | 42.0%
| 287.0
/ inf
| 317 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (105/79); new base C (126/7); total (231/86) |
| Fisher's exact test for biased strand distribution p-value = 3.95e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.24e-04 |
Only 100 of 323 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084
|
tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 2:75385/1‑100 (MQ=255)
tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt < 1:2929442/100‑1 (MQ=255)
ctgcCGGATGGCGCTGCACGCGGAGGCACAGCGCCACGGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:2363313/1‑100 (MQ=255)
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:3288729/1‑100 (MQ=255)
ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 2:1244450/1‑100 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:1244446/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:2237018/100‑2 (MQ=37)
aTGGCGCTGCACGCAGTGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:2171244/100‑3 (MQ=25)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:2585685/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:2704199/100‑1 (MQ=255)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGTATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 1:3638596/1‑100 (MQ=255)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 1:3143893/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa < 2:846729/100‑1 (MQ=255)
atGCACGCAGAGGCACAGCGCCCCCGGGTATAGAGGTTGTTGACAAAGGGCGCTTTGTTTATGACGGATTCGGCGTTAACGCCTTATCCGGCCTAC‑aaaa > 1:3377083/2‑100 (MQ=21)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:1343124/1‑100 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 1:152041/1‑100 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 2:3239664/1‑100 (MQ=255)
cgatctggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:556371/94‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:3185546/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCATg > 1:3846442/1‑100 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1161768/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1562290/100‑1 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 2:1373877/100‑1 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCCCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:3082814/100‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:2267071/1‑100 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:1412288/100‑1 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt > 2:2606558/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAt‑ttt > 1:1074708/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCg < 1:3501177/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCg < 2:2995149/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAggac > 1:2389369/1‑98 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGa > 1:3744466/1‑100 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGc < 1:1976622/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTA‑CA‑GAAT‑TTTCGTAGGCCTGATAAGc < 1:2470434/100‑1 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCgg < 1:2205020/100‑1 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCa > 1:26943/1‑100 (MQ=255)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCAt > 2:3772392/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATc > 1:141880/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATc < 2:1791456/100‑1 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATc < 1:1690462/100‑1 (MQ=255)
tgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATc > 2:2264423/6‑99 (MQ=17)
gtaggCCGGATAAGGCGTTCACGCTGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CCAT‑CCTCGTAGGCCTGATAAGCGTAGCGCATCAg > 2:645012/5‑100 (MQ=18)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:1889616/5‑100 (MQ=18)
gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATGCAATACATTG‑CA‑GAAG‑TTTCGTAGACCTGATAAGCGGAGCGCATCAg > 1:2980673/5‑100 (MQ=18)
gtaggCCGGATAAGGCGCTTACGCCGCATCCGGCCTAC‑AAGAACGTGCAAATTCAACAAATTGTGATGCAT‑CCT‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:515598/5‑100 (MQ=18)
taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1483394/4‑100 (MQ=17)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTG‑CA‑GAGA‑TTATGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2553222/4‑100 (MQ=17)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAgg > 1:3266774/1‑100 (MQ=255)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAgg < 1:3801484/100‑1 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAAGCGTGCAAATTCAATACATTG‑CA‑TGGG‑CCATGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:4033404/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GGAG‑CTGCGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1713708/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑CAGGGAC‑TAT‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 2:3792127/3‑100 (MQ=18)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGc < 2:1966884/100‑1 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:2898305/1‑100 (MQ=255)
ggctggataaggcgTTCACGCCGCATCCAGCCTAC‑AAAATTGTGCAAAATCAATGGATTG‑CA‑CAGC‑TAGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2329378/11‑100 (MQ=25)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:4283658/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:693336/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCACTATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:732366/2‑100 (MQ=17)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:966751/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTG‑CA‑ATCT‑TCTGGTAGGCCTGATAAGCATCGCGCATCAGGCa > 1:1574412/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACTCCGCATCCGGCCTAC‑AAAAGCACGCAAATTCAATATATTG‑CA‑GAGA‑TTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:4098772/2‑100 (MQ=11)
ggCCGGATAAGGCGTTCACGCCGCATGCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTG‑AT‑CGAT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2679109/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GGCT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2075891/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑CAGGGAC‑TAT‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 2:2470596/2‑100 (MQ=18)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt < 2:3083076/100‑1 (MQ=255)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:2747060/1‑100 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑CA‑TGAG‑CCACGTAGTCCTGATAAGCGTAGCGCATCAGGCag > 1:1008699/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑CA‑TGAG‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:3151441/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CCAT‑CCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:2803502/1‑99 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GGAG‑CTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2227271/1‑99 (MQ=18)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1177795/9‑98 (MQ=18)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1376719/9‑98 (MQ=18)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GAGT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:457522/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:4384513/9‑98 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑CA‑GTTT‑ATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 2:3873554/9‑98 (MQ=25)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTG‑CA‑AGAT‑TTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCacg > 2:4129596/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTG‑CA‑GAGA‑TCATGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:4052065/9‑98 (MQ=14)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GGAG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 2:1286656/9‑100 (MQ=18)
ccGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GGAG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 1:1279166/1‑100 (MQ=21)
ccGGATAAGGCGGTCACTCCGCATCCGACCTAC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GGAG‑GTATGTATGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:4302543/1‑99 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑CAGGGAC‑TAT‑GTAGGCCTGATAAGCATAGCGCATCAGGCagct > 2:4234326/8‑97 (MQ=18)
cggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 2:2418941/8‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:3501717/7‑98 (MQ=21)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GAGT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3355097/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2287956/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3937798/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1778834/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GGCT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3320088/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTG‑CAGGAAC‑GAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 2:2121114/7‑96 (MQ=25)
ggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:1042106/7‑100 (MQ=18)
ggataaggcgGTTACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTG‑CA‑ATCT‑CCGTGTAGGCATGATAAGCGTAGCGAATCAGGccat > 1:4190648/7‑95 (MQ=17)
aTGCGGCGTTAACGCCTTATCCTGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑TA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:802814/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:923938/100‑1 (MQ=255)
taaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgc > 1:3555881/4‑100 (MQ=18)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 2:2022169/1‑100 (MQ=255)
gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:1834323/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:4160287/1‑100 (MQ=255)
ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt < 2:3556852/100‑1 (MQ=255)
ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:3395845/1‑100 (MQ=255)
ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:209480/100‑1 (MQ=255)
|
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
